Lysobacter yananisis: RDV84_06550
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Entry
RDV84_06550 CDS
T09342
Name
(GenBank) efflux transporter outer membrane subunit
KO
K18139
outer membrane protein, multidrug efflux system
Organism
lya
Lysobacter yananisis
Pathway
lya01501
beta-Lactam resistance
lya02024
Quorum sensing
Module
lya_M00642
Multidrug resistance, efflux pump MexJK-OprM
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RDV84_06550
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RDV84_06550
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lya02000
]
RDV84_06550
01504 Antimicrobial resistance genes [BR:
lya01504
]
RDV84_06550
Transporters [BR:
lya02000
]
Other transporters
Pores ion channels [TC:
1
]
RDV84_06550
Antimicrobial resistance genes [BR:
lya01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
RDV84_06550
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
RDV84_06550
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
RDV84_06550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
YkyA
DUF3110
Motif
Other DBs
NCBI-ProteinID:
WMT04486
LinkDB
All DBs
Position
complement(1543102..1544493)
Genome browser
AA seq
463 aa
AA seq
DB search
MSRLRTLARTAALAAATAALAACVTIAPPPALDAPPAAWRDAPGAGIAVQRDWWRGYNDP
ALSQLVETALEHNTDLRLAAARVAEARALLDAQGAQQWPTLDLAGSATRARSVGAATGRP
NLSTVSQPQFQAAYEVDLWGRLGSLTDAARANLLASQTGADSVRLSVAAAVASGYLGLRA
SDARLDVARRTLASRENALKLAQRRYDTGYTSRLELAQAQAEYRATAQVVPQLALAIRRQ
EDALSVLLGRAPQPIQRGRPLAEIAAPALPAAGVPSQLLRRRPDIAQGEAQIAASDASLA
AARAQLLPSLRLTGSIGSLESSLLHGDPIRVWSVGGSVLAPLFNAGRLRAGVHASAARRD
QAVLGYQKTVLTAFAEVEDAMAAIAHLREQREQAVQQQQALAEALRIAHNRYNEGYASYL
EELDAQRNLFNAELTALQLQGDALTAEVNLYKALGGGWEAAAR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgagccggctgcgcacgctcgcgcgcaccgccgcgctcgccgcggcgacggcggcgctc
gccgcctgcgtcaccatcgccccgccgccggcgctggacgcgccgcccgcggcgtggcgc
gacgcgcccggcgccggcatcgcggtgcagcgcgactggtggcgcggctacaacgatccg
gcgctgtcgcagttggtcgagaccgcgctcgaacacaacaccgacctgcgcctggccgcc
gcgcgcgtggccgaagcgcgcgcgctgctcgacgcgcagggcgcgcagcagtggccgacg
ctggacttggccggcagcgccacccgcgcgcgcagcgtcggcgcggcgaccggacggccg
aatctgtcgaccgtcagccagccgcagttccaggcggcgtacgaagtcgatctgtggggc
cgcctgggttcgctgaccgacgcggcgcgcgccaacctgctcgccagccagaccggcgcc
gacagcgtgcgcctgagcgtcgccgcggcggtggcctccggttatctgggcctgcgcgcc
agcgacgcgcgcctggacgtggcccggcggactctggcctcgcgcgagaacgcgctcaag
ctggcccagcgccgttacgacaccggctacacctcgcgcctggaactggcccaggcccag
gccgaataccgcgccaccgcgcaggtggtgccgcagctggcgctggcgatccggcgccag
gaagacgcgctgtcggtcttgctcggtcgcgcgccgcagccgatccaacgcggccggccg
ctggccgagatcgccgcgcccgcgctgccggcggccggcgtgccctcgcaactgctgcgg
cgccgtcccgacatcgcccagggcgaggcgcagatcgccgccagcgacgccagcctcgcc
gccgcgcgcgcgcaactgctgccgtcgctgcgcctgaccggttcgatcggcagcctggaa
tcgagcctgctgcacggcgatccgatccgggtgtggagcgtcggcggcagcgtgctggcg
ccgctgttcaacgccggccgcctgcgcgccggcgtccacgccagcgccgcgcgccgcgac
caggcggtgctgggctatcagaagaccgtgctgaccgcgttcgccgaagtcgaggacgcg
atggcggcgatcgcccacctgcgcgaacagcgcgagcaggccgtgcaacagcaacaggcg
ctggccgaagcgctgcggatcgcgcacaaccgctacaacgagggttatgcctcgtacctg
gaagagctcgacgcgcagcgcaacctgttcaacgcggaactgaccgcgctgcagttgcag
ggcgacgcgctgacggcggaggtgaatctgtacaaggcgctgggcggcgggtgggaggcg
gcggcgcggtga
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