KEGG   PATHWAY: lyo02010
Entry
lyo02010                    Pathway                                
Name
ABC transporters - Lysinibacillus sp. OF-1
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
lyo02010  ABC transporters
lyo02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Lysinibacillus sp. OF-1 [GN:lyo]
Gene
NV349_00715  [KO:K02011]
NV349_00720  [KO:K02010] [EC:7.2.2.7]
NV349_00725  [KO:K02012]
NV349_00825  [KO:K23059]
NV349_00830  [KO:K17077]
NV349_00835  [KO:K23060]
NV349_00955  [KO:K11631]
NV349_00960  [KO:K11632]
NV349_01005  [KO:K02073]
NV349_01010  [KO:K02072]
NV349_01015  [KO:K02071]
NV349_01460  [KO:K10117]
NV349_01465  [KO:K10118]
NV349_01470  [KO:K10119]
NV349_01490  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
NV349_01515  [KO:K15555] [EC:7.6.2.14]
NV349_02090  [KO:K18887]
NV349_02095  [KO:K18888]
NV349_02355  [KO:K02072]
NV349_02360  [KO:K02071]
NV349_02365  [KO:K02073]
NV349_02405  [KO:K13889]
NV349_02410  [KO:K13890]
NV349_02415  [KO:K13891]
NV349_03385  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
NV349_03390  ftsX; permease-like cell division protein FtsX [KO:K09811]
NV349_03705  [KO:K17319]
NV349_03755  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
NV349_03765  [KO:K02002]
NV349_04060  [KO:K11069]
NV349_04065  [KO:K11070]
NV349_04070  [KO:K11071]
NV349_04075  [KO:K11072] [EC:7.6.2.11]
NV349_04175  [KO:K02010] [EC:7.2.2.7]
NV349_04180  [KO:K02011]
NV349_04185  [KO:K02012]
NV349_04760  [KO:K10823]
NV349_04765  [KO:K15583]
NV349_04770  [KO:K15582]
NV349_04775  [KO:K15581]
NV349_04780  [KO:K15580]
NV349_05450  [KO:K07335]
NV349_05455  [KO:K23537]
NV349_05460  [KO:K23535]
NV349_05465  [KO:K23536]
NV349_05580  [KO:K20490]
NV349_05585  [KO:K20491]
NV349_05590  [KO:K20492]
NV349_06175  [KO:K02002]
NV349_06180  [KO:K02001]
NV349_06185  [KO:K02000] [EC:7.6.2.9]
NV349_06250  [KO:K23188]
NV349_06255  [KO:K23187]
NV349_06260  [KO:K23186]
NV349_06265  [KO:K25286]
NV349_06575  [KO:K23184]
NV349_06580  [KO:K23182]
NV349_06585  [KO:K23183]
NV349_06590  [KO:K23181]
NV349_06815  [KO:K07335]
NV349_06880  [KO:K11051]
NV349_06885  [KO:K11050]
NV349_06930  [KO:K02044]
NV349_06935  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
NV349_06940  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
NV349_06945  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
NV349_07605  [KO:K18104] [EC:7.6.2.2]
NV349_08545  [KO:K15580]
NV349_08550  [KO:K15581]
NV349_08555  [KO:K15582]
NV349_08560  [KO:K15583]
NV349_08565  [KO:K10823]
NV349_08610  [KO:K05847] [EC:7.6.2.9]
NV349_08615  opuFB; osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB [KO:K05845 K05846]
NV349_09040  [KO:K03523]
NV349_09455  [KO:K18887]
NV349_09460  [KO:K18888]
NV349_10075  nikA; nickel ABC transporter substrate-binding protein [KO:K15584]
NV349_10080  [KO:K15585]
NV349_10085  [KO:K15586]
NV349_10705  [KO:K17073]
NV349_10710  [KO:K17074]
NV349_10715  [KO:K17076]
NV349_11055  [KO:K19350]
NV349_11065  nikA; nickel ABC transporter substrate-binding protein [KO:K15584]
NV349_11070  [KO:K15585]
NV349_11075  [KO:K15586]
NV349_11080  [KO:K15587] [EC:7.2.2.11]
NV349_11085  [KO:K10824] [EC:7.2.2.11]
NV349_11615  [KO:K01998]
NV349_11620  [KO:K01997]
NV349_11625  [KO:K01996]
NV349_11630  [KO:K01995]
NV349_11635  [KO:K01999]
NV349_12685  [KO:K18890]
NV349_12690  [KO:K18889]
NV349_12770  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
NV349_12775  modB; molybdate ABC transporter permease subunit [KO:K02018]
NV349_12930  [KO:K11709]
NV349_12935  [KO:K11708]
NV349_12940  [KO:K11710] [EC:7.2.2.5]
NV349_12945  [KO:K11707]
NV349_13470  [KO:K02007]
NV349_13475  [KO:K02009]
NV349_13480  cbiQ; cobalt ECF transporter T component CbiQ [KO:K02008]
NV349_13485  [KO:K02006]
NV349_13550  [KO:K03523]
NV349_14355  pstB; phosphate ABC transporter ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
NV349_14360  pstA; phosphate ABC transporter permease PstA [KO:K02038]
NV349_14365  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
NV349_14370  [KO:K02040]
NV349_14535  [KO:K09816]
NV349_14540  [KO:K09817] [EC:7.2.2.20]
NV349_15445  [KO:K02073]
NV349_15450  [KO:K02072]
NV349_15455  [KO:K02071]
NV349_15460  [KO:K02073]
NV349_16670  [KO:K16959]
NV349_16675  [KO:K16958]
NV349_16680  [KO:K16957]
NV349_16740  [KO:K15555] [EC:7.6.2.14]
NV349_16760  [KO:K14699] [EC:7.-.-.-]
NV349_16765  [KO:K14698] [EC:7.-.-.-]
NV349_16775  [KO:K16785]
NV349_17525  [KO:K09815]
NV349_17980  [KO:K23163]
NV349_17985  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
NV349_17990  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
NV349_17995  [KO:K02045] [EC:7.3.2.3]
NV349_18225  [KO:K02073]
NV349_18230  [KO:K02072]
NV349_18235  [KO:K02071]
NV349_18830  [KO:K10038] [EC:7.4.2.1]
NV349_18835  [KO:K10037]
NV349_18840  [KO:K10036]
NV349_19355  [KO:K09814] [EC:7.6.2.-]
NV349_19360  [KO:K09813]
NV349_20215  [KO:K19340]
NV349_20220  [KO:K19341]
NV349_20565  [KO:K15581]
NV349_20570  [KO:K15582]
NV349_20580  [KO:K10823]
NV349_20590  [KO:K15580]
NV349_21110  [KO:K16918]
NV349_21115  [KO:K16920]
NV349_21490  abc-f; ABC-F type ribosomal protection protein [KO:K18231]
NV349_21620  [KO:K20461]
NV349_21625  [KO:K20460]
NV349_21630  [KO:K20459]
NV349_21875  abc-f; ABC-F type ribosomal protection protein [KO:K18231]
NV349_22165  [KO:K16785]
NV349_22170  [KO:K16787] [EC:7.-.-.-]
NV349_22175  [KO:K16786] [EC:7.-.-.-]
NV349_22335  [KO:K11632]
NV349_22340  [KO:K11631]
NV349_22575  [KO:K01996]
NV349_22580  [KO:K01995]
NV349_22585  [KO:K01998]
NV349_22590  [KO:K01997]
NV349_22595  [KO:K01999]
NV349_22685  [KO:K16960] [EC:7.4.2.1]
NV349_22690  [KO:K16959]
NV349_22695  [KO:K16958]
NV349_22700  [KO:K16957]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

DBGET integrated database retrieval system