KEGG   Mus caroli (Ryukyu mouse): 110285507
Entry
110285507         CDS       T05910                                 
Symbol
Smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30 isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
mcal  Mus caroli (Ryukyu mouse)
Pathway
mcal03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mcal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110285507 (Smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mcal03041]
    110285507 (Smndc1)
Spliceosome [BR:mcal03041]
 Complex A
  U2 snRNP components
   U2 related factors
    110285507 (Smndc1)
 Complex B
    110285507 (Smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    110285507 (Smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR TraX-like
Other DBs
NCBI-GeneID: 110285507
NCBI-ProteinID: XP_021007392
Ensembl: MGP_CAROLIEiJ_G0023072
UniProt: A0A6P5P1B8
LinkDB
Position
19:complement(49877107..49888761)
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLTS
SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLL
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaggatctagcaaaacagttggctagctacaaagctcaactccagcaagtagaa
gctgctctttctggaaatggagaaaatgaagatctattgaaactgaaaaaggatttgcaa
gaagtaatagaactgaccaaagaccttctgtcaactcagccttcagagacgcttacaagc
tcagacagttttgcttctactcagcccactcactcatggaaagtaggggacaagtgcatg
gccgtgtggagtgaagacggacagtgttacgaagcggagattgaagagatagatgaagaa
aacggcaccgctgcaatcacctttgctgtttacggcaatgccgaagtgacaccattgctg
aacctcaagcctgtagaagaaggaaggaaggcgaaagaggacagcggcaacaaacccatg
tcaaaaaaagaaatgatcgcccagcagcgtgaatataaaaagaaaaaagctttgaaaaaa
gcacagaggataaaagagctggagcaggagcgagaggaccagaaggtgaaatggcagcag
ttcaacaacagggcgtactcgaagaacaagaaaggccaggtaaagaggagtatttttgct
tctccagaaagtgtaacgggcaaagttggagtaggaacttgtggaattgcggacaagccc
atgacacaatatcaagatacatccaagtacaatgtcaggcatttgatgcctcagtag

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