Mus caroli (Ryukyu mouse): 110295715
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Entry
110295715 CDS
T05910
Symbol
Lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03018
RNA degradation
mcal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110295715 (Lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
110295715 (Lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110295715 (Lsm3)
03041 Spliceosome [BR:
mcal03041
]
110295715 (Lsm3)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110295715 (Lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
110295715 (Lsm3)
Spliceosome [BR:
mcal03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110295715 (Lsm3)
Complex C
U2 snRNP components
110295715 (Lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
Peptidase_M16_M
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
110295715
NCBI-ProteinID:
XP_029334096
UniProt:
A0A6P7RA51
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All DBs
Position
6:87550000..87558749
Genome browser
AA seq
95 aa
AA seq
DB search
MNILSQRNTKVLNLLLIIHLYLXSHVPCFSNLTLPLQAYDQHLNMILGDVEETVTTIEID
EETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgaacattctaagccaaagaaacaccaaagtattgaacctgttacttataatccacttg
tatcttttnagccatgttccttgtttctcaaatctcaccctcccacttcaggcttatgat
caacatttaaatatgatcctgggagatgtagaagaaactgtgacaacgatagagattgat
gaggagacatatgaagagatatataaatccacaaaacgaaacatccctatgctcttcgtc
cggggagatggtgtcgttctagtcgcccctccattgagagttggctga
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