Mus caroli (Ryukyu mouse): 110301054
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Entry
110301054 CDS
T05910
Symbol
Ldlr
Name
(RefSeq) low-density lipoprotein receptor isoform X1
KO
K12473
low-density lipoprotein receptor
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03272
Virion - Hepatitis viruses
mcal04144
Endocytosis
mcal04913
Ovarian steroidogenesis
mcal04925
Aldosterone synthesis and secretion
mcal04927
Cortisol synthesis and secretion
mcal04934
Cushing syndrome
mcal04976
Bile secretion
mcal04979
Cholesterol metabolism
mcal05145
Toxoplasmosis
mcal05160
Hepatitis C
mcal05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
110301054 (Ldlr)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
110301054 (Ldlr)
09150 Organismal Systems
09152 Endocrine system
04913 Ovarian steroidogenesis
110301054 (Ldlr)
04925 Aldosterone synthesis and secretion
110301054 (Ldlr)
04927 Cortisol synthesis and secretion
110301054 (Ldlr)
09154 Digestive system
04976 Bile secretion
110301054 (Ldlr)
04979 Cholesterol metabolism
110301054 (Ldlr)
09160 Human Diseases
09172 Infectious disease: viral
05160 Hepatitis C
110301054 (Ldlr)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
110301054 (Ldlr)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
110301054 (Ldlr)
09167 Endocrine and metabolic disease
04934 Cushing syndrome
110301054 (Ldlr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcal04131
]
110301054 (Ldlr)
Membrane trafficking [BR:
mcal04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
110301054 (Ldlr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF_LRP2
hEGF
EGF_3
Motif
Other DBs
NCBI-GeneID:
110301054
NCBI-ProteinID:
XP_021026939
Ensembl:
MGP_CAROLIEiJ_G0031880
UniProt:
A0A6P5QA77
LinkDB
All DBs
Position
9:17733779..17759869
Genome browser
AA seq
861 aa
AA seq
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MSTADLMCRWVIALLLAAAGVAAEDSCSRNEFQCRDGKCIASKWVCDGSPECPDGSDESP
ETCMSVTCQSNQFSCGGRVSRCIPDSWRCDGQVDCENDSDEQGCPPKTCSLDDFRCQDGK
CISPQFVCDGDRDCLDGSDEAHCKATTCGPAHFRCNSSTCIPSLWACDGDGDCDDGSDEW
PQNCQGRDTASKGVSSPCSSLEFHCGSSECIHRSWVCDGEADCKDKSDEEHCAVATCRPD
EFQCADGSCIHGSRQCDREHDCKDMSDELGCVNVTQCDGPNKFKCHSGECISLDKVCDSA
RDCRDWSDEPIKECETNECLDNNGGCSHICKDLKIGSECLCPSGFRLVDLHRCEDIDECQ
EPDTCSQLCVNLEGSYKCECRAGFHMDPHTRVCKAVGSIGYLLFTNRHEVRKMTLDRSEY
TSLLPNLKNVVALDTEVTNNRIYWSDLSQKKIYSALMDQAPNLSYDTIISEDLHAPDGLA
VDWIHRNIYWTDSVPGSVSVADTKGVKRRTLFQEAGSRPRAIVVDPVHGFMYWTDWGTPA
KIKKGGLNGVDIHSLVTENIQWPNGITLDLSSGRLYWVDSKLHSISSIDVNGGNRKTILE
DENQLAHPFSLAIYEDKVYWTDVINEAIFSANRLTGADVNLVAENLLSPEDIVLFHNVTQ
PRGVNWCETTALPNGGCQYLCLPAPQIGPHSPKFTCACPDGMLLAKDMRSCLTEVDTVPT
TQGTSAVGPVVTESAARPPKHNEDLSAPSTPRQPVDTPGLSTVASVTVSHQVQGDMAGRG
HEEQPRGVRFLSIFFPIALVALLVLGAVLLWRNWRLKNINSINFDNPVYQKTTEDELHIC
RSQDGYTYPSRQMVSLEDDVA
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgcggatctgatgtgtcgctgggtcatcgccctgctcctggctgctgccgga
gttgcagcagaagactcatgcagcaggaacgagttccagtgtagagacggaaaatgcatc
gctagcaagtgggtgtgtgacggcagccccgagtgcccagatggctctgatgagtcccca
gagacatgcatgtctgtcacctgtcagtccaatcaattcagctgtggaggccgtgtcagc
cgatgcattcctgactcctggagatgtgatggacaggtagactgtgaaaatgactcagac
gaacaaggctgtccccccaagacgtgctccctggatgacttccgctgccaggatggcaag
tgcatctccccgcagtttgtgtgtgatggagaccgagattgcctggacggctctgatgag
gcccactgcaaggccaccacttgtggccccgcccacttccgctgcaactcatccacatgc
atccccagcctttgggcctgcgacggggatggcgactgtgatgacggctccgatgagtgg
ccacagaactgccagggccgagacacggcctccaaaggggttagcagcccctgctcctcc
ctggagttccactgtggtagtagtgagtgtatccatcgcagctgggtctgtgacggcgag
gcagactgcaaggacaagtcagacgaggagcactgcgcggtggccacctgccgacctgat
gaattccagtgtgcagatggctcctgcattcacggtagccgccagtgtgaccgtgaacat
gactgcaaggacatgagcgacgagcttggctgcgtcaatgtgacacagtgtgatggcccc
aacaagttcaagtgtcacagtggggagtgcatcagcttggacaaggtgtgcgactctgcc
cgggactgccgggactggtcggatgagcccatcaaggagtgcgagaccaacgagtgtttg
gacaacaatggtggctgttcccacatctgcaaggacctcaagataggctctgagtgcctg
tgtcccagtggcttccggctggtggacctccacaggtgtgaagatattgacgagtgtcag
gagccagacacctgcagccagctctgtgtgaacctggaaggcagctacaagtgtgagtgc
cgggccggcttccacatggacccacacaccagggtctgcaaggctgtgggctccataggc
tatctgctcttcaccaaccgccacgaggtccggaagatgaccctggaccgcagcgagtac
accagtctgctccccaacctgaagaatgtggtggctctcgacactgaggtgaccaacaat
agaatctactggtccgacctgtcccaaaaaaagatctacagcgccctgatggaccaggcc
cctaacttgtcctacgacaccatcatcagtgaggacctgcatgcccctgacgggctggcg
gtagactggatccaccgcaacatctactggacagattcagtcccaggcagtgtgtctgtg
gccgacaccaagggcgtaaagaggaggacactgttccaagaggcagggtccagacccaga
gccatcgtagtggaccctgtgcatggcttcatgtactggacagattggggaacacccgcc
aagatcaagaaagggggtttgaatggtgtggacatccactcactggtgaccgaaaacatc
cagtggccaaatggcatcacactagatctttccagtggccgtctctattgggttgattcc
aaactccactctatctccagcattgatgtcaatgggggcaatcggaaaaccattttggag
gatgagaaccagctggcccaccccttctccttggccatctatgaggacaaagtatattgg
acagatgtcataaacgaagccattttcagtgccaatcgactcacgggtgcagatgtgaat
ttggtggctgaaaacctcttgtccccagaggacattgtcttgttccacaacgtcacacag
cctagaggggtgaactggtgtgagacaacagccctccccaatggtggttgccagtacctg
tgcctgcccgccccacagatcggtccccactcgcccaaattcacctgtgcctgccctgat
ggcatgctgctggccaaggacatgcggagctgcctcacagaagtcgacactgtaccgacc
acccaggggacatccgccgtcgggcctgtggtcaccgaatcagctgccaggccaccgaag
cacaatgaggatctctcagctcccagtactcctaggcagcctgtggacaccccagggctc
agcacagtggcgtcagtgacagtgtcccaccaagtccagggtgacatggctggcagaggg
catgaggagcagccacgtggtgtgaggttcctgtccatcttcttccctattgcactggtt
gccctccttgtccttggggctgtcctactgtggaggaactggcggctgaagaacatcaac
agcataaactttgacaacccagtctaccagaagaccacagaggacgaactccacatttgc
cgaagccaggacggctatacctacccctcaagacagatggtcagcctggaggacgatgtg
gcgtga
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