Mus caroli (Ryukyu mouse): 110304195
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Entry
110304195 CDS
T05910
Symbol
Scn4a
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mcal04040
]
110304195 (Scn4a)
Ion channels [BR:
mcal04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
110304195 (Scn4a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
110304195
NCBI-ProteinID:
XP_021031083
Ensembl:
MGP_CAROLIEiJ_G0017321
UniProt:
A0A6P5QDG4
LinkDB
All DBs
Position
11:complement(102219382..102265223)
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AA seq
1841 aa
AA seq
DB search
MASSSLPTLVPPGPHCLRPFTPESLAAIEQRAMEEEARLQRNKQMEIEEPERKPRSDLEA
GKNLPLIYGDPPPEVIGIPLEDLDPYYSDKKTFIVLNKGKAIFRFSATPALYMLSPFSIV
RRVAIKVLIHALFSMFIMITILTNCVFMTMSNPPSWSKDVEYTFTGIYTFESLIKMLARG
FCIDDFTFLRDPWNWLDFSVITMAYVTEFVDLGNISALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPPMNDTNTTWYGNDTW
YGNDTWYGNDTWYGNDTWNSQESWVSNSTFDWEAYINDEGNFYFLEGSNDALLCGNSSDA
GHCPEGYECMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIF
FVVIIFLGSFYLINLILAVVAMAYAEQNEATLAEDQEKEEEFQQMLEKFKKHQEEMEKAK
AAQALEGGEEADGDPTHSKDCNGSLDTSGEKGPPRPSCSAESAISDAMEELEEAHQKCPP
WWYKCAHKVLIWNCCAPWVKFKHIILLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHF
DNVLSVGNLVFTGIFTAEMVLKLIAMDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLS
VLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSY
KECVCKIASDCSLPRWHMHDFFHSFLIVFRILCGEWIETMWDCMEVAGQAMCLTVFLMVM
VIGNLVVLNLFLALLLSSFSADSLAASDEDGEMNNLQIAIGRIKWGIAFAKTFLLGLLHG
KILSLKDIMLRLGEPGGAGENGESPPEDEKKEPPPEDGNKELKDNHILNHVGLTDGPRSS
IEMDHLNFINNPYLTIHVPIASEESDLEMPTEEETDTFSEPEDIKKPLQPLYDGNSSVCS
TADYKPPEEDPEEQAEENPEGELPEECFTEACVKRCPCLYVDISQGRGKMWWTLRRACFK
IVEHNWFETFIVFMILLSSGALAFEDIYIEQRRVIRTILEYADKVFTYIFILEMLLKWVA
YGFKVYFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGM
RVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCINTTTSERFDVSVVNNK
SECESLMYTGQVRWMNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREKEEQPDYE
VNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKL
GSKKPQKPIPRPQNKIQGMVYDFVTKQVFDISIMILICLNMVTMMVETDDQSQLKVDILY
NINMVFIIVFTGECVLKMFALRHYYFTIGWNIFDFVVVILSIVGLALSDLIQKYFVSPTL
FRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAY
VKKESGIDDMFNFETFGNSIICLFEITTSAGWDGLLNPILNSGPPDCDPTLENPGTNIKG
DCGNPSIGICFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLCEDDFEMFYETWEK
FDPDATQFIDYSRLSDFVDTLQEPLKIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKE
VLGDSGEMDALKQTMEEKFMAANPSKVSYEPITTTLKRKQEEVCAIKIQRAYRRHLLQRS
VKQASYMYRHSQEGNGDGAPEKEGLLANTMNKMYGSEKEDNGVQSQGEKEKGSTEDAGPT
TEVTAPSSSDTALTPPPPSPPPPSSPPQGQTVRPGVKESLV
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atggccagctcatctctgcccaccctggtccccccgggtccccactgcctgcgccccttc
accccagagtccctggcagccatagagcagagggcaatggaggaggaagcccggctgcag
cggaacaagcaaatggagattgaggagcctgagcggaagccacgcagtgacctggaagct
ggcaagaacctcccactcatctatggggaccccccacctgaagtcattggcatccccctg
gaggacctggacccttactacagtgacaagaagaccttcattgtgctcaacaaaggaaag
gccatcttccgattctctgccacccctgccctctacatgctgagccccttcagcatcgtc
cggcgggtggctatcaaggtgctcatccacgcgctgttcagcatgttcatcatgattacc
atcttgaccaactgcgtgttcatgaccatgagcaacccgccttcttggtccaaggacgtg
gagtacaccttcacagggatctacacctttgagtccctcattaagatgctggccagaggc
ttttgcattgatgacttcacattcctccgagacccctggaactggctggacttcagtgtc
atcacaatggcgtatgtgacagagtttgtggacttgggcaacatctcagccctgaggacc
ttccgtgtgctgcgggccctgaaaaccatcacggtcatcccagggctgaagacgatcgtg
ggagccctgatccagtctgtgaaaaagctgtccgatgtgatgatcctcactgtcttctgc
ctgagcgtctttgccctggtggggctgcagcttttcatgggaaacctgcgtcagaagtgc
gtgcgttggcccccgcccatgaatgacaccaacaccacatggtatggtaatgatacgtgg
tacggcaatgacacgtggtatggcaatgacacctggtatggcaatgacacttggaacagc
caggagagctgggtcagcaactctacctttgactgggaggcctacatcaatgatgaaggg
aacttctatttcttggagggctccaatgatgccctgctctgtgggaatagcagtgatgcc
gggcactgccctgagggctacgaatgcatgaaggctgggaggaaccccaactatggctac
accagctacgacaccttcagctgggccttcctggctctcttccgtctcatgacacaggac
tactgggagaaccttttccagctgacccttcgagccgctggcaagacctacatgatcttc
tttgtggtcatcatcttcctgggttccttctacctcatcaatctgatcctggcggtggtg
gccatggcgtacgctgagcagaacgaggctaccctggccgaagaccaggagaaagaggag
gagttccaacagatgcttgaaaaattcaaaaaacatcaggaggaaatggaaaaggcgaag
gctgcccaggctctggaaggtggagaggaggcagatggggacccaacccacagcaaagac
tgcaatggtagcctggatacatccggggagaaggggcccccgaggccaagctgcagcgca
gagagtgccatctcagatgctatggaggagctggaagaggcccatcagaagtgcccccca
tggtggtacaagtgtgcacacaaagtgctcatctggaactgctgtgccccgtgggtgaag
ttcaagcatattatcctcctgatcgtcatggacccctttgtggacctgggcatcaccatc
tgcatcgtgctcaacaccctcttcatggccatggagcactaccccatgaccgagcacttt
gacaacgtgctctctgtgggcaacttggtcttcacgggcatcttcaccgcagagatggtg
ctgaagctgattgccatggacccctatgaatatttccaacagggctggaacatcttcgac
agcttcatcgtcaccctcagcctggtggagctgggcctggccaacgtgcagggcctatca
gtgctccgttctttccgtctgctgcgtgtcttcaagctggccaagtcatggccaacactc
aacatgctcatcaaaatcattggcaactcagtgggcgcactgggcaacctgaccctggtg
ttggccatcatcgtcttcatcttcgccgtggtgggcatgcagctgtttggcaagagctat
aaggaatgtgtgtgcaagattgcctcagactgcagcctgccccgctggcacatgcacgat
ttcttccactccttcctcatcgtcttccgcatcctctgtggggagtggattgagaccatg
tgggactgcatggaagtggccggccaggccatgtgcctcaccgtcttcctcatggtcatg
gtcattggcaacctggtggtcctgaatctgttcctggctctcctgttgagttccttcagt
gctgacagtttggcagcatcagatgaagatggtgagatgaacaacctacagatcgccatc
gggcgtatcaagtggggcatcgcctttgccaaaaccttcctcttggggctgttgcatggc
aagatcctgagcctcaaggacataatgctccgtctcggcgagcctgggggtgctggggaa
aacggggagagccctcccgaggatgagaagaaggagccgccaccggaagatgggaacaag
gagctgaaagataatcatatcctgaaccacgtgggcctgactgatggaccccgctccagc
atcgagatggaccaccttaacttcatcaacaacccctacctcactatccatgtgcccatt
gcctccgaggagtccgacttggaaatgcccacagaagaggagactgacaccttctcggag
cctgaggacatcaagaagccactacagcccctgtacgacgggaactcctccgtctgcagc
acagctgactacaagccccccgaagaggaccctgaggagcaggctgaggagaaccctgag
ggggagctacctgaagagtgtttcacagaggcctgtgtgaagcgctgcccctgcctctat
gtggacatctcccagggccgtgggaaaatgtggtggacactgcgcagggcctgcttcaag
attgttgagcacaactggtttgagaccttcatcgtcttcatgatcttgctcagcagcggg
gccctggccttcgaggacatctacattgaacagcggcgagtcatccgaaccatcctggaa
tatgctgacaaggtcttcacctacatcttcatcctggagatgctgctaaagtgggtggcc
tacggcttcaaggtgtacttcaccaatgcctggtgctggctcgacttcctcattgtggat
gtctccatcatcagcctggtggctaactggctgggctactctgagctggggcccatcaaa
tccctgcgcacgctccgggccctgcgacctctgagggcactgtcccgatttgaaggcatg
agggtggtggtgaacgcccttctgggagccatcccttccatcatgaacgtgctccttgtc
tgcctcatcttctggctcatcttcagcatcatgggggtcaacttgtttgctggaaagttc
tactactgcatcaacacaaccacctccgagagattcgacgtctctgtggtcaacaacaag
tccgagtgtgagagcctcatgtacactggccaggtccgctggatgaacgtcaaggtcaac
tatgacaacgtgggtctcggctacctctcccttcttcaggtggccactttcaagggttgg
atggacatcatgtatgcagctgtggactcccgggagaaagaggagcagccagactacgag
gtgaacctctacatgtacctttacttcgtcatctttatcatcttcggctccttcttcacc
ctcaatctcttcattggcgtcatcattgacaacttcaaccaacagaagaagaagtttgga
gggaaagacatcttcatgacagaggaacagaagaaatactacaacgcgatgaagaagctt
ggctccaagaagccccagaagccaatcccccggcctcagaacaagatccaaggcatggtg
tacgacttcgtgacaaagcaggtgtttgacatctctatcatgatcctcatctgcctcaac
atggtgacgatgatggtggagacggacgaccagagccagctcaaggtggacatcctgtat
aacatcaacatggtcttcattatcgtcttcacaggggagtgtgtgctcaagatgtttgcc
ctgcgccattactacttcaccattggctggaatatcttcgacttcgtggttgtcatcttg
tccattgtgggtctcgcgctctctgacttgatacagaaatactttgtgtcacccacactg
ttccgtgtgatccgcttggctcggatcgggcgtgtcttgcgtctgatccgtggggccaag
ggcatccggacgctgctgttcgccctgatgatgtccctgcctgccctcttcaacatcggc
ctccttctctttctggtcatgttcatttactccatcttcggcatgtctaacttcgcctac
gtcaagaaagagtcgggcatcgacgacatgttcaactttgagacctttggcaacagtatc
atctgcctcttcgagatcaccacgtccgctggctgggacgggcttctgaaccccatcctc
aacagcgggcccccagactgtgacccaacgttggagaacccaggcaccaatatcaagggt
gactgcggcaacccatccatcggcatctgtttcttctgcagctacatcatcatctccttc
ctcatcgtggtcaacatgtacattgccatcatcctagagaatttcaatgtggccactgaa
gagagcagtgagcccctctgcgaggacgacttcgagatgttctatgagacctgggagaag
ttcgaccctgacgcaactcagttcatcgactacagccgcctttctgactttgtggacacc
ctgcaggagcccttgaaaattgccaagcccaataagatcaagcttatcacattagacctg
cccatggtacccggggacaagatccactgcctggacatcctctttgccctgaccaaagag
gtactgggtgactctggggaaatggatgctctcaaacagaccatggaggagaagttcatg
gcagccaacccctccaaggtctcctatgagcccatcaccaccaccctcaagaggaagcag
gaggaggtgtgtgctatcaaaatccagagggcttaccgccgccacctgctgcagcgctct
gtgaagcaggcctcttacatgtaccgccacagccaggaaggcaatggcgacggggcccct
gagaaggagggattgcttgccaacaccatgaacaagatgtatggctccgagaaagaggac
aacggtgtgcagagccagggggagaaagagaaaggctcaacagaggatgctggacccacc
acggaagtcacagcccccagcagctcggacactgctctgactcctcctcctccttctcct
ccaccaccatcatcaccaccacaagggcagacagtgcgcccaggggtcaaagagtctctt
gtctag
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integrated database retrieval system
