Mus caroli (Ryukyu mouse): 110304296
Help
Entry
110304296 CDS
T05910
Symbol
Eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110304296 (Eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcal03041
]
110304296 (Eftud2)
Spliceosome [BR:
mcal03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110304296 (Eftud2)
Complex C
U5 SnRNP specific factors
110304296 (Eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
110304296
NCBI-ProteinID:
XP_021031228
Ensembl:
MGP_CAROLIEiJ_G0017263
UniProt:
A0A6P5QKM6
LinkDB
All DBs
Position
11:complement(98807513..98848030)
Genome browser
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDEDEDEDDVGEHEDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PSSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgagtttgggaattatattggaccagagcttgattctgat
gaagatgatgatgaactgggaagagagacaaaagatcttgatgagatggatgaggatgag
gacgaggatgacgtgggagagcacgaggatgaccaccccggcatggaggtggtgctgcat
gaggacaagaagtactaccccacggccgaggaggtgtacggccccgaggtggagaccata
gtccaggaggaagacacccagcccctcacagagcccattataaagccagtgaaaaccaag
aaattcaccctgatggagcagacgctacccgtcacggtgtatgagatggatttcttagca
gatctgatggacaactctgagctcatcagaaacgtgaccttgtgtggccatctgcaccac
ggcaagacctgtttcgtagattgtttaatagaacagacgcatccggaaatcagaaagcgc
tatgaccaagatctatgctatactgacatcctcttcacagaacaagagagaggcgtcggc
atcaagagcactcctgtgacggtggtgctgccggacaccaaagggaagtcttacctcttc
aacatcatggacacgccaggtcatgtgaatttttctgatgaggtcacagctggcttgcgc
atctcagatggagtagtccttttcattgatgctgctgagggggtgatgctgaacacagag
cggctaatcaaacacgcagtgcaggaaaggttagcagtcaccgtgtgcatcaacaaaatc
gaccggctgatcttggagctgaagctgcctccaacagatgcttattacaagctgcgacac
attgtggatgaagtcaacggattaataagcatgtattccaccgacgagaacctgatcctt
tctccgctcctgggcaacgtctgcttctccagttcccagtacagcatctgcttcacactg
ggttcctttgccaagatctacgctgacacctttggtgacattaattaccaggaatttgct
aaaagactctggggtgacatctacttcaatcctaagacgagaaagttcaccaaaaaggct
ccaagcagcagctcccagaggagcttcgtagagttcatcttggagccactctataagatc
ctggcccaggtggtgggtgatgtggacaccagcctgccaaggaccctggacgaacttggc
atccacctcaccaaggaagagctaaagctgaacatccgccccctgctcaggctggtctgc
aaaaagttctttggcgagttcacaggctttgtggacatgtgtgtgcagcacattccatct
ccaaaggtgggcgccaaacccaagatcgagcatacctacactggcggcgtggactctgac
cttggcgaggccatgagcgactgtgacccagatggtcccctgatgtgccacacgacgaag
atgtacagcacagatgatggagtccagtttcacgccttcggccgggtgctaagcggcacc
atccacgcggggcagcctgtgaaggtgctgggggagaactacaccttggaagacgaggaa
gattcccagatctgcaccgtgggccgcctttggatctccgttgccaggtaccacattgag
gtgaatcgtgttcctgctggcaactgggttctgattgaaggtgttgaccagccgatcgtg
aagacagcaaccattactgagccccgaggcaatgaggaggctcagattttccggcccttg
aaattcaataccacatctgttatcaagattgccgtggagccggttaacccctcagagctg
cccaaaatgcttgatggcctgcgcaaggtcaacaagagctatccatctctcaccaccaag
gtggaagagtctggcgagcatgtgatcctgggcactggggagctctacctggattgcgtg
atgcacgaccttcggaagatgtactcagagatcgacatcaaggtggctgacccagttgtg
acgttttgtgagacagtggtagaaacatcctccctcaaatgctttgctgagacacccaat
aagaagaacaagatcaccatgattgccgagccccttgagaagggccttgctgaggacata
gagaatgaagtggtccagatcacctggaacagaaagaagctgggagagtttttccaaaca
aagtacgactgggatctgctggctgcccgttccatctgggccttcggacctgatgctaca
ggccccaacatcctagtagatgatacgctgccctcagaggtagacaaggcccttctcggc
tcagtgaaggacagcattgttcaaggtttccagtgggggaccagggaaggacccctctgc
gatgaattgattcggaatgtcaagtttaagatcctggatgctgtggttgcccaggaaccc
ctccatcggggtggaggtcagatcatccccacagccaggagggtagtgtactctgccttc
ctcatggccactccccgtctgatggagccttactactttgtagaggtccaggctcctgca
gattgtgtgtctgctgtttacacagtcctggccagacgcaggggtcatgtgactcaggat
gcacccataccaggctcccctctctataccatcaaagcgttcatcccggccatcgactca
ttcggctttgagactgatctccgcactcacacccagggacaggccttttccctgtctgtc
ttccaccattggcagattgtcccaggcgatcctctggacaagagcattgtcattcgccca
ctggagccacagccagctcctcacctggctcgggagttcatgatcaaaacccgtcgtagg
aagggcctgagtgaagatgtgagcatcagcaagttcttcgatgatcctatgttgctggag
ctcgccaaacaggatgttgtgctcaattatcccatgtga
DBGET
integrated database retrieval system
