Mus caroli (Ryukyu mouse): 110310932 Help Entry 110310932         CDS       T05910                                  Symbol Thbs1 Name (RefSeq) thrombospondin-1 isoform X2   KO K16857   thrombospondin 1 Organism mcal  Mus caroli (Ryukyu mouse) Pathway mcal04015   Rap1 signaling pathway mcal04115   p53 signaling pathway mcal04145   Phagosome mcal04148   Efferocytosis mcal04151   PI3K-Akt signaling pathway mcal04350   TGF-beta signaling pathway mcal04510   Focal adhesion mcal04512   ECM-receptor interaction mcal04820   Cytoskeleton in muscle cells mcal05144   Malaria mcal05165   Human papillomavirus infection mcal05205   Proteoglycans in cancer mcal05206   MicroRNAs in cancer mcal05219   Bladder cancer Brite KEGG Orthology (KO) [BR:mcal00001]  09130 Environmental Information Processing   09132 Signal transduction    04015 Rap1 signaling pathway     110310932 (Thbs1)    04350 TGF-beta signaling pathway     110310932 (Thbs1)    04151 PI3K-Akt signaling pathway     110310932 (Thbs1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     110310932 (Thbs1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     110310932 (Thbs1)    04148 Efferocytosis     110310932 (Thbs1)   09143 Cell growth and death    04115 p53 signaling pathway     110310932 (Thbs1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     110310932 (Thbs1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     110310932 (Thbs1)  09160 Human Diseases   09161 Cancer: overview    05206 MicroRNAs in cancer     110310932 (Thbs1)    05205 Proteoglycans in cancer     110310932 (Thbs1)   09162 Cancer: specific types    05219 Bladder cancer     110310932 (Thbs1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     110310932 (Thbs1)   09174 Infectious disease: parasitic    05144 Malaria     110310932 (Thbs1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:mcal04131]     110310932 (Thbs1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:mcal00536]     110310932 (Thbs1) Membrane trafficking [BR:mcal04131]  Endocytosis   Phagocytosis    Opsonins     110310932 (Thbs1) Glycosaminoglycan binding proteins [BR:mcal00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    110310932 (Thbs1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 cEGF TSP1_ADAMTS Laminin_G_2 Laminin_G_3 EGF TSP1_CCN Laminin_G_1 Motif Other DBs NCBI-GeneID:  110310932 NCBI-ProteinID:  XP_021039776 Ensembl:  MGP_CAROLIEiJ_G0024112 UniProt:  A0A6P5RAS8 LinkDB All DBs Position 2:110927980..110943087 Genome browser AA seq 1170 aa AA seqDB search MELLRGLGVLFLLHMCGSNRIPESGGDNGVFDIFELIGGARRGPGRRLVKGQDLSSPAFR IENANLIPAVPDDKFQDLLDAVWADKGFIFLASLRQMKKTRGTLLAVERKDNSGQIFSVV SNGKAGTLDLSLSLPGKQQVVSVEEALLATGQWKSITLFVQEDRAQLYIDCDKMESAELD VPIQSIFTRDLASVARLRVAKGDVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSSTNVLL TLDNNVVNGSSPAIRTNYIGHKTKDLQAICGLSCDELSSMVLELKGLRTIVTTLQDSIRK VTEENRELVSELRRPPLCFHNGVQYKNNEEWTVDSCTECHCQNSVTICKKVSCPIMPCSN ATVPDGECCPRCWPSDSADDGWSPWSEWTSCSATCGNGIQQRGRSCDSLNNRCEGSSVQT RTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARE TKACKKDACPINGGWGPWSPWDICSVTCGGGVQRRSRLCNNPTPQFGGKDCVGDVTENQV CNKQDCPIDGCLSNPCFAGAKCTSYPDGSWKCGACPPGYSGNGIQCKDVDECKEVPDACF NHNGEHRCKNTDPGYNCLPCPPRFTGSQPFGRGVEHAMANKQVCKPRNPCTDGTHDCNKN AKCNYLGHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCKKDNCPN LPNSGQEDYDKDGIGDACDDDDDNDKIPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPYN HNPDQADTDNNGEGDACAVDIDGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLEH NPDQLDSDSDLIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDN DGIPDDRDNCRLVPNPDQKDSDGDGRGDACKDDFDHDNVPDIDDICPENFDISETDFRRF QMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDD DYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNSTTGPGEHLRNAL WHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIYD KTYAGGRLGLFVFSQEMVFFSDMKYECRDS NT seq 3513 nt NT seq  +upstreamnt  +downstreamnt atggagctcctgcggggattaggtgtcctgttcctgttgcatatgtgtggaagcaaccgc attccagagtctgggggagacaacggtgtgtttgacatctttgagctcattggaggtgca cgaaggggccccggtcgccgactggtgaagggccaagatctatccagccctgccttccga attgagaatgccaacctgatccccgctgtgccggatgacaagttccaagacctactggat gctgtgtgggcagacaaaggcttcatcttcctggcttccttgaggcagatgaagaagact cggggcacactcctggctgtggaacggaaagacaacagtggccagatcttcagtgtggtc tccaacggcaaagctggcaccctggacctgagcctgagcctgccggggaagcaacaagtg gtgtcagtggaggaagctctcctggccactggccagtggaagagcatcacgctgtttgtt caagaggaccgggctcaactctacattgactgtgataagatggagagcgcggagctggat gtacccatccagagcatcttcaccagggatctggccagcgttgctaggctccgagttgca aagggagatgtcaatgacaattttcagggggtgctgcagaatgtgaggtttgtctttgga accaccccagaagacattctcaggaacaaaggctgctccagctctaccaacgtccttctc acccttgacaacaacgtggtgaacggttccagccctgcgatccgcaccaactacatcggc cacaaaacaaaggacctccaagctatctgtggcctctcctgtgacgaactatccagcatg gtcctggaactgaagggcctgcgcaccatcgtgaccacgctgcaggacagcatccgcaaa gtgacggaagaaaacagagagctggtcagtgagctgaggcggcctcccctctgctttcac aatggagtccagtacaagaacaacgaggagtggactgtagacagttgcacagagtgtcac tgccagaactcggttaccatctgcaaaaaggtgtcctgtcccatcatgccctgctccaac gccacagttcctgatggtgaatgctgcccacggtgctggcccagcgactctgctgacgat ggctggtctccctggtctgagtggacctcctgctctgccacatgtggcaatgggattcag caacgtggtcgctcctgtgacagcctcaacaacagatgcgagggctcttcggtacagacg aggacctgccacattcaggagtgcgacaaaagatttaaacaggatggtggctggagtcac tggtctccgtggtcgtcctgttctgtgacctgtggtgacggtgtgatcacaaggatccgg ctctgcaactcccccagcccccagatgaacgggaagccctgtgaaggtgaagcccgggag accaaagcctgcaagaaagatgcctgcccaattaatggaggctggggtccctggtcacca tgggacatctgctctgtcacctgtggaggaggagtgcagagacgcagccgactctgtaac aaccccacaccccagtttggaggcaaagactgtgttggcgatgtgacagaaaatcaagtt tgcaacaagcaggactgtccgattgatggatgcctgtccaatccctgctttgctggtgcc aagtgtactagctaccctgatggtagctggaaatgtggtgcgtgtcctcctggctacagt ggaaatggcatccagtgcaaagacgtcgatgagtgcaaagaagtgcctgatgcttgcttc aatcacaacggagaacatcggtgcaagaacacagatcctggctacaactgcctgccctgc ccaccacgattcaccggctcacagcccttcggccgaggtgtcgaacatgccatggccaac aaacaggtgtgcaaacctcgaaacccctgcacggacgggacgcatgactgcaacaagaac gccaagtgcaactacctgggtcactacagcgaccccatgtaccgctgtgagtgcaagccc ggctacgcaggcaatggcatcatctgcggagaggacacagacctggacggctggcctaat gaaaacctggtgtgtgtggccaacgcaacctaccactgcaaaaaggacaactgtcccaac cttcccaactcagggcaggaagactatgacaaggacgggattggcgatgcctgcgatgat gacgatgacaacgacaagatccccgatgacagggacaactgtccattccattacaaccca gcccagtatgactatgacagagatgatgtgggagaccgctgtgacaactgcccctacaac cacaaccctgaccaagcagacacagacaacaacggggagggcgatgcctgtgcggtggac atcgatggagatggaatcctcaatgaacgagacaactgccagtacgtttacaacgtggac cagagggacacggacatggatggggttggagatcagtgtgacaactgccccctggaacac aatccagaccagctggactctgactcagacctcataggggacacttgtgacaacaatcag gacatcgatgaggatggccatcagaacaatctggacaactgtccctatgtgcctaatgcc aaccaggccgaccatgataaagatggcaaaggagatgcctgtgaccatgacgatgacaat gacggcatccctgatgacagagacaactgcaggctggtgcccaatcctgaccagaaggac tctgatggtgatggccgaggtgatgcctgcaaagacgactttgaccatgacaatgtgcca gacattgatgacatctgtcctgagaattttgacatcagtgaaaccgatttccgacgattc cagatgattcctctagatcccaaaggaacctcccaaaatgatcctaactgggttgtccgc catcagggcaaagaactcgtccagactgtaaactgtgaccctggacttgctgtaggttat gatgagtttaatgccgtggacttcagcggtaccttcttcatcaacaccgagagagatgat gactatgctggctttgttttcggctaccagtccagcagccgcttctacgttgtgatgtgg aaacaagtcacccagtcctactgggacaccaaccccacaagagctcagggatactcaggc ctgtctgtaaaggttgtgaactccaccaccggccctggcgagcacctgcggaatgcactg tggcacacaggaaacacccctggccaggtgcgcaccctgtggcatgaccctcgccacatc ggctggaaagatttcactgcgtacagatggcggctcagccacaggccaaagaccggtttt atcagagtggtgatgtatgaaggaaagaaaatcatggctgactcgggacccatctatgac aaaacctacgccggcggtagactaggcctgttcgtcttctctcaagaaatggtgttcttc tcggacatgaaatacgagtgtcgagattcctaa

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