Malus domestica (apple): 103450832
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Entry
103450832 CDS
T03194
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103450832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103450832
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103450832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_25
AAA
Arf
AAA_23
ORC-CDC6-like
AAA_30
nSTAND3
AAA_7
Zeta_toxin
TsaE
AAA_28
Motif
Other DBs
NCBI-GeneID:
103450832
NCBI-ProteinID:
XP_008388453
LinkDB
All DBs
Position
12:complement(join(27206389..27206604,27206681..27206911,27207000..27207518))
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AA seq
321 aa
AA seq
DB search
MGVNPNSEPSIEINGLKFTYPGINGHPPPGSKPLIEDFNLTLNAGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTALTGSGDLSYLGGEWRRDVAFAGFDVPIQMDVS
ADKLINGVAGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPYKVLLLDEI
TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLENWPSHIAYVANGKLQLAMPMEK
VREISKLSLMRTVESWLRKEREEERKRRKERKAKGLPEFEQPNEGSGDVRSVNNGWAAGR
LNSTIAGEENFVFSSNRVLRQ
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgaatccaaactccgagccgtcgatcgagatcaacggcctaaaattcacctac
ccaggaatcaacggccacccgccgccgggctccaagccgctgatcgaggacttcaatctc
accctcaatgccggcgaccgatgcctcctcgtcggatccaacggcgcggggaaaaccacg
atcttgaagatcctgggcggcaagcacatggtcgagccccacatggttcgcgtgctcgga
aggtcggcgtttcacgacaccgccttgaccggctccggcgacctctcgtatctcggcgga
gagtggcggcgagatgtcgcattcgccgggtttgatgtcccgattcaaatggacgtttcg
gccgataagttgatcaatggggttgcggggatcgacccacaaaggagagcagagctgata
aaggttttggatattgatctttcatggcggttgcacaaggtgtccgatggtcagagaaga
cgagtgcaaatctgtatgggtctgctcaagccatacaaggttcttctgctagacgagata
acggtggacctcgatgtgctagcaagagctgaccttctcaagttcttgaggaaggaatgc
gaagagcgaggcgccacgatcatttatgctacgcatatatttgacgggttggaaaattgg
ccctcgcatatcgcttatgttgcgaatgggaagttgcagctagcaatgccaatggagaaa
gttagggagatctccaagttgtcactaatgaggacagtcgagagttggctgaggaaggag
cgtgaggaggagaggaagagaaggaaggagagaaaggcgaagggtcttccggagtttgag
caaccaaatgagggaagcggtgatgttcgttcagtgaacaatggttgggcagctggacgc
ctgaattccaccattgccggagaagagaactttgtcttcagctcaaacagagttctcagg
caataa
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