KEGG   Malus domestica (apple): 103451039
Entry
103451039         CDS       T03194                                 
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    103451039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103451039
Enzymes [BR:mdm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103451039
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     103451039
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C PTCB-BRCT RNA_ligase DNA_ligase_IV
Other DBs
NCBI-GeneID: 103451039
NCBI-ProteinID: XP_008388689
LinkDB
Position
16:complement(join(26630541..26631267,26632203..26632358,26633093..26633251,26633357..26633487,26633629..26633731,26633835..26633934,26634073..26634198,26634617..26634820,26635005..26635092,26635240..26635288,26635378..26635473,26636055..26636138,26636930..26636988,26637252..26637286,26637388..26637512,26639102..26639177,26639600..26639755,26642327..26642333,26642416..26642453,26642575..26642654,26643730..26643801,26644099..26644190,26644290..26644364,26644708..26644844,26644931..26645016,26645249..26645340,26646302..26646637))
AA seq 1162 aa
MATDETKFSVLCSLFNWMQKSKTSTLKRSKFRRFLDNFCKPANYFSAIRLILPSLDRERG
SYGLKESVLATCLIDALGIARDSEDALRLINWRKGGAKTGANAGNFSLVAAEVLQRRQGL
SSGGLTIKELNDLLDRLASSENRAEKTSVLSTLINKTNAQEMKWIVMIILKDLKLGTSEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLSDRNQRHKRQDIEVGKAVRPQLAMRVGDANIAW
KKFHGKEVVVECKFDGDRIQIHKNGTEVHYFSRNFLEHSEYTHAMSDIIVENVLADRCIL
DGEMLVWDTSSSRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQSLKER
HELLQKVVNPLKGCLEILVPNRGLNAHCNEGEPCWSLIATSVDDVEKFFKDTIENRDEGI
VLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGVVAQFLVGLAER
PVPNTYPRRFVSFCRVGTGLSDEEIEAVATKLKPYLRKYEYPKKAPPSFYQVTNNSKERP
DVWVESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFIELV
QAGNGTTQRGTDYGGLQDTKKKSKKSPRKEEKRNLSIVPSHFVQTDVSGVKEDTLLFSNM
MFYFVNVPPTHSFDSLHKLVVENGGTFSMNLNNAVTHCVAADGKGIKYQAAKHHGDIIHI
SWVLDCCSQKKLLPLQPKYYLFLSDSSKKLQEEIDDFSDSYYWDLDLAEIKQLLINIHRS
EDSEVVNYYKKKYCPVERWSRFHDCCIYFKSSIHSLKPDWEVVLGFTLRRLRIEVLRGGG
RVTDSLVHATHLVVLSVQGPDGFETLLRSFTEADKRYLHSKRLHIVGSQWLEDCLERDQR
LQEETYSLKPYGLEESNVEEWKHDMGLEEAPCDVDAVENHSSSFPNRKGKEIEVKAAPEN
CKILDSPERGSKRKRGRPARTSLNKGKSTVNQARRAWARIGRKPAKISGNESEESGSHDN
TSLGEEVDLGERIHGTVGQESIDIQENEAMKDSELLQRGKAVEQDVAEDIRIEEPYKIPE
IKMMEKHNVQESEKPEELEATADPVEAMLFDMIPSLGMKKAETTYTSTRDEKPARDPIPN
AGPSKKKKVSYKDIASELLKDW
NT seq 3489 nt   +upstreamnt  +downstreamnt
atggctaccgacgagaccaagttcagcgtgctctgcagcctcttcaactggatgcagaaa
tccaaaacctcaaccctaaagcgttccaaattccgcagatttctcgacaatttctgcaaa
cccgccaattacttcagcgccattcgcctcattcttcccagcctcgaccgcgagcgtggc
tcctacggcctcaaggagtccgtgcttgccacctgcctcatcgacgccctcggcatcgcc
agagactccgaggacgctctccgcctcattaattggcgcaaaggtggcgccaagaccggc
gccaatgccgggaacttctccctcgtggcggcggaggtgttgcaacgtagacaggggttg
agttcaggtggactaacaatcaaggagttaaatgacttgcttgatcgtttagcttcgagt
gaaaacagggcagagaagacttcagttctttcaaccttgataaacaagacaaatgcacag
gaaatgaagtggattgtcatgatcattcttaaagatctgaagctgggaactagtgaaaag
agcatctttcacgaatttcatccagatgctgaagatttgtttaatgtcacatgcgacttg
aaattggtctgtgaaaagctcagtgatagaaatcagcgccataaacgccaggacattgaa
gttggaaaagctgtgcgcccacaactagctatgagagttggtgatgcaaatattgcatgg
aaaaagtttcatggtaaggaagtggttgttgagtgtaaattcgatggcgatcgcatccaa
attcataagaacggaactgaagtacattacttctcaaggaattttcttgagcactctgaa
tacacacatgcaatgtcagacattatcgtagaaaatgtgctggctgataggtgtattctt
gatggtgagatgttggtctgggacacatcttctagtcgttttgctgagtttggttcaaat
caagaaatagccaaggcagcaagggacgggcttgacagtgatagacagttgtgctatgtt
gcattcgatatcctctatgttggagatactagtgtgattcaccagagcttgaaggaacga
catgagcttctccagaaagttgtgaatccattgaagggttgtttagagattttagtaccc
aatcgtggtcttaacgctcactgtaatgaaggggaaccttgctggtcgcttattgctact
agtgtggatgatgttgagaagtttttcaaagataccatcgaaaatagagatgaggggatt
gttttgaaggaccttggttcgaaatgggaacctagtgatcgtagtggaaaatggttaaaa
ttaaagccagactacattcgtgcaggttctgatctggacgttcttatcataggaggatac
tatggctctggacgtcgtggaggagtggtagctcagttcttggtgggtcttgctgagcgt
ccagttccaaatacatatcctagaaggtttgtatccttttgcagagtgggcactggactt
tctgatgaagagatagaagctgttgcaacaaaattaaagccgtatttgaggaaatatgag
tacccaaaaaaggcaccaccaagtttttatcaagtaacaaacaattctaaagagagacca
gatgtttgggttgaaagccctgagaaatcaataatactttctataacaagtgacatcaga
actataaagtctgaggtttttgctgcaccatacagcctgagatttccacgtattgatcgt
gttagatatgataaaccttggcatgaatgccttgatgtgcagtcatttatagagcttgta
caagcaggcaatgggaccacacaaagggggacggattatggtggtctgcaggatactaaa
aagaaaagcaagaagtcccctagaaaggaagagaaaagaaatctgtctattgtcccctct
cattttgttcagactgatgtttcgggcgtgaaggaggacacattactattttcaaatatg
atgttttactttgttaatgtgcctcccactcattcttttgattccttgcacaagctagtt
gttgagaatgggggtactttctctatgaatttaaataatgctgttacacactgtgttgca
gctgatggcaaagggatcaagtatcaggcagcaaagcatcatggagatatcattcatatc
tcttgggtgttggattgttgttctcaaaagaaactccttccattacagccaaagtactat
ctcttcttatctgactcttctaagaagttacaagaagagattgatgatttttctgactcg
tactactgggatcttgaccttgcggagataaagcagcttttaatcaacattcatagatca
gaggactccgaagttgttaactattacaagaaaaaatactgtccggtggagagatggtct
cgctttcatgactgctgcatttactttaaatcctcaattcattccttgaagccggattgg
gaagttgtcttaggattcacactgagaaggttgaggattgaagttctcaggggtggtggc
agagtcactgacagtcttgttcatgcgacccatttggtagtcttgtccgtgcagggtcct
gatggatttgaaactttattacgaagtttcactgaagcagacaaacgatatctgcatagc
aaaaggttgcatattgttggatctcaatggttggaagactgcttggaaagggaccaaaga
ttgcaagaggaaacatatagcttaaaaccctatgggttggaagaatccaacgttgaagaa
tggaaacatgacatgggtctagaagaagcaccctgtgatgtggatgctgtggaaaaccac
agttcttcttttcctaaccggaaaggaaaagagattgaagtaaaagcggctccagaaaac
tgtaagatcttggactcacccgagaggggaagcaaaaggaaaaggggaagacctgctcgc
acaagcttgaacaaaggaaaatcaactgtcaaccaagctagaagagcatgggcgcgtatt
ggaaggaagccagctaaaatatctggcaacgagtcagaagagagtggctctcatgacaat
acatcacttggggaagaggttgatctgggagaaagaattcacggaacggtaggtcaggaa
agtatagacatccaagaaaatgaagcaatgaaagattctgaattgttacaaagaggcaaa
gcagttgagcaagacgtcgctgaggacattagaattgaagagccttacaaaattcctgaa
atcaaaatgatggagaaacataacgtccaagaaagtgaaaagccggaggaacttgaagct
acggctgatcctgttgaagccatgttgtttgacatgattccaagtcttggtatgaaaaaa
gctgaaactacatatacgagtactcgagatgagaaaccagcacgggatccgataccgaat
gcaggaccttcaaagaaaaagaaagttagctacaaggatattgctagtgagctgctgaag
gattggtaa

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