KEGG   PATHWAY: niy02010
Entry
niy02010                    Pathway                                
Name
ABC transporters - Nitratireductor mangrovi
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
niy02010  ABC transporters
niy02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Nitratireductor mangrovi [GN:niy]
Gene
FQ775_00375  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
FQ775_00380  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
FQ775_00385  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
FQ775_00535  [KO:K12372]
FQ775_00540  [KO:K12371]
FQ775_00545  [KO:K12370]
FQ775_00550  [KO:K12369]
FQ775_00555  [KO:K12368]
FQ775_01900  [KO:K02010] [EC:7.2.2.7]
FQ775_03080  [KO:K12536]
FQ775_03180  [KO:K11085] [EC:7.5.2.6]
FQ775_03320  [KO:K17315]
FQ775_03325  [KO:K17316]
FQ775_03330  [KO:K17317]
FQ775_03335  [KO:K10112] [EC:7.5.2.-]
FQ775_03695  [KO:K01999]
FQ775_04520  [KO:K15577]
FQ775_04525  [KO:K15576]
FQ775_04600  [KO:K01999]
FQ775_04605  [KO:K01997]
FQ775_04610  [KO:K01998]
FQ775_04615  [KO:K01995]
FQ775_04620  [KO:K01996]
FQ775_04655  [KO:K10439]
FQ775_04660  [KO:K10441] [EC:7.5.2.7]
FQ775_04665  [KO:K10440]
FQ775_04675  [KO:K10439]
FQ775_04680  [KO:K10441] [EC:7.5.2.7]
FQ775_04685  [KO:K10440]
FQ775_05125  [KO:K05813]
FQ775_05130  [KO:K05814]
FQ775_05135  ugpE; sn-glycerol-3-phosphate ABC transporter permease UgpE [KO:K05815]
FQ775_05140  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
FQ775_05200  [KO:K10545] [EC:7.5.2.10]
FQ775_05205  [KO:K10544]
FQ775_05210  xylF; D-xylose ABC transporter substrate-binding protein [KO:K10543]
FQ775_05240  [KO:K02036] [EC:7.3.2.1]
FQ775_05245  pstA; phosphate ABC transporter permease PstA [KO:K02038]
FQ775_05250  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
FQ775_05255  [KO:K02040]
FQ775_05330  [KO:K01998]
FQ775_05335  [KO:K01997]
FQ775_05340  [KO:K01996]
FQ775_05350  [KO:K01995]
FQ775_05355  [KO:K01999]
FQ775_05440  [KO:K07335]
FQ775_05445  [KO:K23535]
FQ775_05450  [KO:K23536]
FQ775_05455  [KO:K23537]
FQ775_06690  ccmA; heme ABC exporter ATP-binding protein CcmA [KO:K02193] [EC:7.6.2.5]
FQ775_06695  ccmB; heme exporter protein CcmB [KO:K02194]
FQ775_06705  [KO:K02195]
FQ775_06710  ccmD; heme exporter protein CcmD [KO:K02196]
FQ775_06755  [KO:K10440]
FQ775_06760  [KO:K10441] [EC:7.5.2.7]
FQ775_06765  [KO:K10439]
FQ775_07190  [KO:K01998]
FQ775_07195  [KO:K01997]
FQ775_07200  [KO:K01996]
FQ775_07205  [KO:K01995]
FQ775_07210  [KO:K01999]
FQ775_07270  modC; molybdenum ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
FQ775_07275  modB; molybdate ABC transporter permease subunit [KO:K02018]
FQ775_07280  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
FQ775_08075  [KO:K01996]
FQ775_08080  [KO:K01995 K01998]
FQ775_08085  [KO:K01997]
FQ775_08095  [KO:K01999]
FQ775_08110  [KO:K01995]
FQ775_08115  [KO:K01996]
FQ775_08120  [KO:K01997]
FQ775_08125  [KO:K01998]
FQ775_08130  [KO:K01999]
FQ775_08235  [KO:K01999]
FQ775_08250  [KO:K01998]
FQ775_08255  [KO:K01997]
FQ775_08260  [KO:K01996]
FQ775_08265  [KO:K01995]
FQ775_08425  [KO:K10440]
FQ775_08430  [KO:K10441] [EC:7.5.2.7]
FQ775_08435  [KO:K10439]
FQ775_08440  [KO:K10439]
FQ775_08455  [KO:K10440]
FQ775_08520  thiQ; thiamine ABC transporter ATP-binding protein [KO:K02062] [EC:7.6.2.15]
FQ775_08525  thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein [KO:K02063]
FQ775_08530  [KO:K02064]
FQ775_08565  [KO:K10547]
FQ775_08570  [KO:K10548] [EC:7.5.2.-]
FQ775_08575  [KO:K10546]
FQ775_09310  [KO:K01995]
FQ775_09320  [KO:K01997]
FQ775_09325  [KO:K01998]
FQ775_09330  [KO:K01999]
FQ775_09335  [KO:K01996]
FQ775_09625  [KO:K11072] [EC:7.6.2.11]
FQ775_09630  [KO:K11069]
FQ775_09635  [KO:K11070]
FQ775_09640  [KO:K11071]
FQ775_09695  [KO:K01999]
FQ775_09700  [KO:K01997]
FQ775_09705  [KO:K01998]
FQ775_09710  [KO:K01995]
FQ775_09790  [KO:K07335]
FQ775_09795  [KO:K23537]
FQ775_09800  [KO:K23535]
FQ775_09805  [KO:K23536]
FQ775_09850  [KO:K16785]
FQ775_10130  [KO:K02002]
FQ775_10135  choW; choline ABC transporter permease subunit [KO:K02001]
FQ775_10140  choV; choline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
FQ775_10480  [KO:K23536]
FQ775_10485  [KO:K23535]
FQ775_10495  [KO:K23537]
FQ775_10530  [KO:K07335]
FQ775_10905  [KO:K01999]
FQ775_10910  [KO:K01997]
FQ775_10915  [KO:K01998]
FQ775_10920  [KO:K01995]
FQ775_10925  [KO:K01996]
FQ775_10940  [KO:K01995]
FQ775_10945  [KO:K01996]
FQ775_10950  [KO:K01997]
FQ775_10955  [KO:K01998]
FQ775_10960  [KO:K01999]
FQ775_11190  [KO:K01996]
FQ775_11195  [KO:K01995]
FQ775_11205  [KO:K01997]
FQ775_11210  [KO:K01999]
FQ775_11505  [KO:K09808]
FQ775_11510  [KO:K09810] [EC:7.6.2.-]
FQ775_11565  [KO:K09972] [EC:7.4.2.1]
FQ775_11570  [KO:K09971]
FQ775_11575  [KO:K09970]
FQ775_11580  [KO:K09969]
FQ775_11780  lptF; LPS export ABC transporter permease LptF [KO:K07091]
FQ775_11785  lptG; LPS export ABC transporter permease LptG [KO:K11720]
FQ775_11960  [KO:K24821]
FQ775_12070  [KO:K10552]
FQ775_12075  [KO:K10553]
FQ775_12080  [KO:K10554]
FQ775_13030  [KO:K13893]
FQ775_13035  [KO:K13893]
FQ775_13040  [KO:K13894]
FQ775_13045  [KO:K13895]
FQ775_13060  [KO:K13896]
FQ775_13155  [KO:K02044]
FQ775_13415  [KO:K23536]
FQ775_13420  [KO:K23535]
FQ775_13425  [KO:K23537]
FQ775_13430  [KO:K07335]
FQ775_13500  [KO:K01999]
FQ775_13505  [KO:K01995]
FQ775_13510  [KO:K01996]
FQ775_13515  [KO:K01997]
FQ775_13520  [KO:K01998]
FQ775_13540  [KO:K01996]
FQ775_13545  [KO:K01995 K01998]
FQ775_13550  [KO:K01997]
FQ775_13555  [KO:K01999]
FQ775_13610  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
FQ775_13615  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
FQ775_13655  [KO:K10441] [EC:7.5.2.7]
FQ775_13665  [KO:K10440]
FQ775_13670  [KO:K10439]
FQ775_13830  [KO:K01996]
FQ775_13835  [KO:K01999]
FQ775_13840  [KO:K01998]
FQ775_13845  [KO:K01997]
FQ775_13850  [KO:K01995]
FQ775_14200  [KO:K10111] [EC:7.5.2.-]
FQ775_14205  [KO:K17243]
FQ775_14210  [KO:K17242]
FQ775_14215  [KO:K17241]
FQ775_15085  [KO:K10112] [EC:7.5.2.-]
FQ775_15090  [KO:K10112] [EC:7.5.2.-]
FQ775_15500  [KO:K11073]
FQ775_15505  [KO:K11076] [EC:7.6.2.16]
FQ775_15510  [KO:K11075]
FQ775_15515  [KO:K11074]
FQ775_15535  [KO:K02011]
FQ775_15540  [KO:K02012]
FQ775_16025  [KO:K11072] [EC:7.6.2.11]
FQ775_16030  [KO:K11071]
FQ775_16035  [KO:K11070]
FQ775_16040  [KO:K11069]
FQ775_16235  [KO:K01997]
FQ775_16240  livM; high-affinity branched-chain amino acid ABC transporter permease LivM [KO:K01998]
FQ775_16245  [KO:K01995]
FQ775_16250  [KO:K01996]
FQ775_16260  [KO:K01999]
FQ775_16435  [KO:K03523]
FQ775_16795  [KO:K10111] [EC:7.5.2.-]
FQ775_16805  [KO:K10119]
FQ775_16810  [KO:K10118]
FQ775_16815  [KO:K10117]
FQ775_16950  [KO:K02067]
FQ775_16955  [KO:K02065]
FQ775_16960  [KO:K02066]
FQ775_17730  [KO:K18893]
FQ775_17735  [KO:K18893]
FQ775_18290  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
FQ775_18540  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
FQ775_18545  phnD; phosphonate ABC transporter substrate-binding protein [KO:K02044]
FQ775_18550  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
FQ775_18555  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
FQ775_18755  [KO:K01999]
FQ775_18760  [KO:K01997]
FQ775_18765  [KO:K01998]
FQ775_18770  [KO:K01995]
FQ775_18775  [KO:K01996]
FQ775_18805  [KO:K10440]
FQ775_18810  [KO:K10440]
FQ775_18815  [KO:K10441] [EC:7.5.2.7]
FQ775_18820  [KO:K10439]
FQ775_18855  [KO:K23536]
FQ775_18860  [KO:K23535]
FQ775_18865  [KO:K23537]
FQ775_18870  [KO:K07335]
FQ775_18965  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
FQ775_19035  [KO:K01997]
FQ775_19040  [KO:K01995 K01998]
FQ775_19045  [KO:K01995]
FQ775_19050  [KO:K01996]
FQ775_19055  [KO:K01999]
FQ775_19560  [KO:K07335]
FQ775_19565  [KO:K23536]
FQ775_19570  [KO:K23535]
FQ775_19575  [KO:K23537]
FQ775_19725  [KO:K01996]
FQ775_19730  [KO:K01995]
FQ775_19735  [KO:K01998]
FQ775_19740  [KO:K01997]
FQ775_19745  [KO:K01999]
FQ775_20235  [KO:K02002]
FQ775_20245  [KO:K17321]
FQ775_20255  [KO:K17323]
FQ775_20260  [KO:K17322]
FQ775_20265  [KO:K17325]
FQ775_20270  [KO:K17324]
FQ775_20745  [KO:K10440]
FQ775_20750  [KO:K10439]
FQ775_20755  [KO:K10439]
FQ775_20775  [KO:K12372]
FQ775_20780  [KO:K12371]
FQ775_20785  [KO:K12370]
FQ775_20790  [KO:K12369]
FQ775_20795  [KO:K12368]
FQ775_21870  [KO:K07335]
FQ775_21875  [KO:K23536]
FQ775_21880  [KO:K23535]
FQ775_21885  [KO:K23537]
FQ775_22060  [KO:K10112] [EC:7.5.2.-]
FQ775_22065  [KO:K10112] [EC:7.5.2.-]
FQ775_22155  [KO:K09810] [EC:7.6.2.-]
FQ775_22160  [KO:K09808]
FQ775_22825  [KO:K07335]
FQ775_22830  [KO:K23537]
FQ775_22835  [KO:K23535]
FQ775_22840  [KO:K23536]
FQ775_22875  [KO:K10227]
FQ775_22880  [KO:K10228]
FQ775_22885  [KO:K10229]
FQ775_22890  [KO:K10111] [EC:7.5.2.-]
FQ775_22960  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
FQ775_22965  [KO:K09811]
FQ775_23070  [KO:K11709]
FQ775_23075  [KO:K11708]
FQ775_23080  [KO:K11710] [EC:7.2.2.5]
FQ775_23085  [KO:K11707]
FQ775_23380  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
FQ775_23385  ugpE; sn-glycerol-3-phosphate ABC transporter permease UgpE [KO:K05815]
FQ775_23390  ugpA; sn-glycerol-3-phosphate ABC transporter permease UgpA [KO:K05814]
FQ775_23395  ugpB; sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB [KO:K05813]
FQ775_23525  [KO:K01999]
FQ775_23535  [KO:K01996]
FQ775_23540  [KO:K01995]
FQ775_23545  [KO:K01998]
FQ775_23550  [KO:K01997]
FQ775_23790  [KO:K15578] [EC:7.3.2.4]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
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