KEGG   PATHWAY: npm00920
Entry
npm00920                    Pathway                                
Name
Sulfur metabolism - Neorhizobium petrolearium
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
npm00920  Sulfur metabolism
npm00920

Module
npm_M00021  Cysteine biosynthesis, serine => cysteine [PATH:npm00920]
npm_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:npm00920]
npm_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:npm00920]
Other DBs
GO: 0006790
Organism
Neorhizobium petrolearium [GN:npm]
Gene
QEO92_17565  cysP; thiosulfate ABC transporter substrate-binding protein CysP [KO:K02048]
QEO92_03295  sulfate ABC transporter substrate-binding protein [KO:K23163]
QEO92_17560  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
QEO92_17555  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
QEO92_17550  sulfate/molybdate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
QEO92_30970  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
QEO92_22145  ABC transporter substrate-binding protein [KO:K15553]
QEO92_30960  ABC transporter permease [KO:K15554]
QEO92_22135  ABC transporter permease [KO:K15554]
QEO92_30965  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
QEO92_22140  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
QEO92_27320  NAD(P)H-dependent oxidoreductase [KO:K00299] [EC:1.5.1.38]
QEO92_27670  cysN; sulfate adenylyltransferase subunit CysN [KO:K00955] [EC:2.7.7.4 2.7.1.25]
QEO92_03265  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
QEO92_03270  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
QEO92_27665  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
QEO92_07125  cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
QEO92_03275  phosphoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
QEO92_19780  soxA; sulfur oxidation c-type cytochrome SoxA [KO:K17222] [EC:2.8.5.2]
QEO92_19765  soxX; sulfur oxidation c-type cytochrome SoxX [KO:K17223] [EC:2.8.5.2]
QEO92_19770  soxY; thiosulfate oxidation carrier protein SoxY [KO:K17226]
QEO92_27645  quinoprotein dehydrogenase-associated SoxYZ-like carrier [KO:K17226]
QEO92_19775  soxZ; thiosulfate oxidation carrier complex protein SoxZ [KO:K17227]
QEO92_19785  soxB; thiosulfohydrolase SoxB [KO:K17224] [EC:3.1.6.20]
QEO92_19790  soxC; sulfite dehydrogenase [KO:K17225]
QEO92_19795  cytochrome c [KO:K22622] [EC:1.8.2.6]
QEO92_19575  PepSY domain-containing protein [KO:K00380] [EC:1.8.1.2]
QEO92_08895  nitrite/sulfite reductase [KO:K00381] [EC:1.8.1.2]
QEO92_24780  FAD/NAD(P)-binding oxidoreductase [KO:K17218] [EC:1.8.5.4]
QEO92_07810  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
QEO92_08575  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
QEO92_07080  PLP-dependent cysteine synthase family protein [KO:K01738] [EC:2.5.1.47]
QEO92_07820  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
QEO92_26725  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
QEO92_21855  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
QEO92_00585  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
QEO92_31190  AMP-binding protein [KO:K20034] [EC:6.2.1.44]
QEO92_22845  long-chain-fatty-acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
QEO92_01040  acyl-CoA dehydrogenase C-terminal domain-containing protein [KO:K20035] [EC:1.3.99.41]
QEO92_02585  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
QEO92_22840  acyl-CoA dehydrogenase C-terminal domain-containing protein [KO:K20035] [EC:1.3.99.41]
QEO92_25050  crotonase/enoyl-CoA hydratase family protein [KO:K20036] [EC:4.2.1.155]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
npm00260  Glycine, serine and threonine metabolism
npm00270  Cysteine and methionine metabolism
npm00680  Methane metabolism
npm00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

DBGET integrated database retrieval system