Nicotiana tabacum (common tobacco): 107780231
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Entry
107780231 CDS
T04643
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
107780231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107780231
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
107780231
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Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
107780231
NCBI-ProteinID:
XP_016456251
UniProt:
A0A1S3YVC2
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All DBs
Position
Un
AA seq
603 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIVDVVEEEPKEDSHGLFVPVDVSKPNPNGMEFDNMYLDMNGII
HPCFHPEGKAAPATYNDVFKSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAEAEEKRLREEFEMEAASLLPTGKPETSDSNVITPGTPFMAVLAVALQYYIH
SRLNKNAGWRFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITPPGQQEKCFACGQVGHLAADCRGTNGNQGENGKGVNETPFHKK
KYQFLNIWVLREYLQYDLEIYNPPFRIDFERVVDDFVFLCFFVGNDFLPHMPTLEIREGA
VNLLMFIYRREFTTMGGYLTDAGEVFLDRVEHFIQAAAVYEDQIFQKRARIKQSIENNER
ARNEVNAQPQPPAEDKVKLGEPGYKERYYSEKFGVSTAEGIDEVRQDVVQKYVEGLCWVC
RYYYQGVCSWQWFYPYHYAPFASDLKGLADLEITFFPGEPFKPFDQLMGVLPAASANALP
EKYRMLMMDPSSPISDFYPTDFELDMNGKRFAWQAVVKLPFIDEKKLLAETKKLEDTLSE
EEQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccagcattttataggtggttggctgatcgatacccgctatcgattgtggac
gtggtagaggaagagcctaaagaggacagtcatgggctgtttgttccagtggatgtttca
aagccgaaccctaatggcatggaatttgataacatgtacttggacatgaatggtatcatt
cacccttgttttcatcccgagggaaaggctgcaccagcaacttacaatgacgtattcaaa
tcaatttttgactacattgaccatcttttctcattagtccgtccaagaaaactcctctat
atggctattgatggagtggctcctagagctaagatgaaccagcagcgaaccaggcgtttt
agagccgctaaagatgccgctgaagctgaagctgaagaaaaaaggttgagggaagagttt
gagatggaggctgctagtttattgcctacaggaaagcctgagacatctgattcaaatgtt
attactcctggtactccatttatggcagtactagcagtagctcttcagtattatatacac
tcgaggttgaataaaaatgcaggctggcggtttaccaaggttatcctttctgatgctaat
gttcctggtgagggtgagcacaaaattatgtcctacatccgcttgcaacgtaaccttcct
ggcttcgacccaaatacccgtcattgtctttatggcctagatgcagatctgattatgctg
tctcttgctactcatgaagtccatttttcaatattgagggaggtgattacaccaccaggt
cagcaggagaagtgttttgcctgtggtcaggttggacatcttgcagctgattgtcgcggt
acaaacggaaaccaaggcgaaaatggaaagggtgtgaatgaaacaccttttcacaagaag
aaatatcagtttctcaacatctgggtgttgcgagagtatctgcaatatgatttggagatt
tacaaccctccatttcggatagactttgaaagggtggtggatgattttgtttttttgtgt
ttttttgttggaaacgattttcttccccatatgccaacactggaaattcgagagggtgcc
gtcaatctgctgatgttcatttatagaagagagtttacaacaatgggtggttatcttaca
gatgcgggtgaggtgtttttggatagagtagaacattttattcaggcggcagcagtttat
gaagaccaaatctttcaaaagagagctaggataaagcagtcaatagaaaataatgaaaga
gcaagaaatgaggttaatgctcagccacagcctccggcggaggacaaggtgaagttaggg
gagcctggatacaaggaaaggtactattccgagaaatttggtgtatcaactgcagagggt
attgatgaagtcagacaagatgtagttcagaagtatgtggaaggattgtgttgggtttgc
cggtattactaccaaggtgtttgctcgtggcaatggttttacccatatcattatgctcca
tttgcttctgacctcaaaggtctggcggacttggaaattacttttttcccaggggaacca
tttaagccctttgatcagctaatgggtgttctgccagctgcaagtgcaaatgctcttcct
gaaaagtacaggatgctaatgatggatccatcatcaccaatttctgatttttacccaaca
gattttgaacttgacatgaatggaaagcgttttgcatggcaggcagttgtaaaattgccg
ttcatcgacgagaagaagttacttgctgaaactaagaagcttgaagacacattatcggaa
gaggaacaa
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