Nicotiana tabacum (common tobacco): 107785646
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Entry
107785646 CDS
T04643
Name
(RefSeq) 5'-3' exoribonuclease 3-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
107785646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107785646
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
107785646
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Ortholog
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GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
107785646
NCBI-ProteinID:
XP_016462480
UniProt:
A0A1S3ZDF2
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All DBs
Position
Un
AA seq
558 aa
AA seq
DB search
MAIDGVAPRAKMNQQRARRFRAAKDAGDEASDTGRIRRNDETEREDLSTKKLDSNVITPG
TKFMELLSSALQYYIRLKVNVDSGWQGIKVILSDASVPGEGEHKIMSYIRLQRNLPGFDP
NTRHCLYGLDADLIMLALASHEVHFSILREDVRKDKSKYRGQQNRQDMYRQQAGRHSKKG
EGGGKDLENLISEQKFQFLKVWVLRDYLGYELQIPDPTVKLDLERLIDDFVFMCLFVGND
FLPHVPSLEISEGAIDLLIDVYKKEFVNMGGYLTNSCQVNLERAGHFIQAIGSYENAVFR
KRIQVQKHWGIHMQRPTLNLAVQKKQDKSNHVQAKTLSVVDKVKLGEEGWKERYYLEKFD
VQTEEDCVKIQRDVVLKYVEGICWVMHYYYQGVCSWQWFYPYHYAPFASDFHDLDRFKIH
STIGKPFKPFDQLMGVLPAASAQALPVSYRKLMTDPLSPILDFYPSDFELDMNGKRHAWQ
AVCKLPFIEESRLLSEIANVEDTLTVDEKHRNSLGLDMLFVYLSHPLATKILAFCARNKD
NPKLPKAKVKRKINPEFR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgatggtgttgcaccacgtgccaaaatgaatcaacaacgtgcaagacgtttc
agagctgctaaagatgctggtgatgaagcctctgatacagggagaataagaaggaatgat
gaaacagaacgggaagatttaagtactaaaaagttggattcaaatgttattacacctgga
acgaaattcatggaactgctgtcatctgcacttcaatactatatacgtttgaaagtgaat
gtagactctggttggcagggaatcaaggttattctctctgatgctagtgtgcctggtgaa
ggggagcataagataatgtcttatattcgcttgcaaaggaatcttccaggatttgatcct
aatacacgacattgcttgtatggtttggacgcagacttgataatgctggcattggcgtca
catgaagttcacttttcaattctaagggaggatgtccgcaaagataaatcaaagtataga
ggtcaacagaataggcaagatatgtatagacaacaagcaggtaggcactcaaaaaaaggg
gaaggaggcggcaaggacttagagaacttaatatcagaacagaagtttcagtttcttaaa
gtatgggtactcagagattatttgggatacgaacttcaaattccagatccaactgtcaaa
ctagacctggagcgactgatagatgattttgttttcatgtgtttatttgttggaaatgat
tttcttccccacgtgccatctttggagatatcagagggagccattgacttactgattgat
gtctacaagaaggaatttgtcaatatgggtggctatcttactaattcttgccaggttaat
ttggagagggcggggcactttatacaagccattggttcttatgagaatgctgtctttagg
aagcgtatccaggtacagaagcattgggggatacacatgcaacgccctacattaaatttg
gctgttcagaagaagcaggacaaaagtaaccatgtacaagccaagaccctttctgtggtt
gataaggttaaattaggagaagagggctggaaagaaagatactatttggaaaaatttgat
gttcaaaccgaagaagattgcgtcaaaattcaaagggatgtggtcttgaaatatgttgaa
ggaatatgttgggtcatgcattattactaccaaggagtgtgctcctggcaatggttttat
ccttatcactatgctccattcgcatctgattttcatgatcttgaccgattcaaaatccac
tccacaattggcaagcccttcaagccttttgatcagctaatgggtgtccttccagctgca
agtgcacaagcacttcccgtttcttacaggaagttgatgacagatccattgtcccctatt
ttagacttctatcctagtgattttgagcttgatatgaatgggaagaggcatgcttggcag
gctgtttgtaagctgccatttattgaagagagccgtcttctatctgagattgcaaatgtt
gaagatactttaacggttgacgaaaagcacagaaacagtctcggccttgatatgttgttt
gtttacttgtcacatcctctagcaacgaagatccttgctttttgtgcaaggaacaaggac
aatccaaagttgccaaaggctaaagtgaaaaggaaaatcaatcccgagttcaggtga
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