Nicotiana tabacum (common tobacco): 107808663
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Entry
107808663 CDS
T04643
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
107808663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107808663
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
107808663
BRITE hierarchy
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Paralog
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Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
107808663
NCBI-ProteinID:
XP_016488688
UniProt:
A0A1S4BII1
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All DBs
Position
Un
AA seq
949 aa
AA seq
DB search
DSDNLLQLLGISPRFSSVFPIVRYYLYIRVFFSTLQPAPATYDDVFKSIFVYIDHLFSLV
RPRKLLYMAIDGVAPRAKMNQQRTRRFRAAKDAAEAEAEEKRLREEFEMEAASLLPTGKP
ETSDSNVITPGTPFMAVLAVALQYYIQSRLNKNAGWRFTKVILSDANVPGEGEHKIMSYI
RLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEVHFSILREVITSPGQQEKCFACGQVGH
LAADCRGTNGNQGEDGKGVNETPIHKKKYQFLNIWVLREYLQYDLEIYNPPFRIDFERVV
DDFVFLCFFVGNDFLPHMPTLEIREGAINLLMCIYRREFTTMGGYLTDAGEVFLDRVEHF
IQAAAVYEDQIFQKRARIKQSIENNERARNEVNAQPQPPAEDKVKLGEPGYKERYYSEKF
GVSTAEGIDEVRQDVVQKYVEGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLKGLADLEI
TFFPGEPFKPFDQLMGVLPAASANALPEKYRMLMMDPSSPISDFYPTDFELDMNGKRFAW
QAVVKLPFIDEKKLVAETKKLEDTLSEEEQLRNSVMFDLLYVHHHHTLAPYIISYYHHNN
KVPPGEQRPWLIDANLSGGMNGFIWLSERNGLRDRVCSPLNGLEDISNNKILNITFLNPV
LHKHIPKPPEGVYMPKKILRAVDIKPFPVLWHEDHGTRRQLGKDRGPVPGAIAGPSLGEA
AHRLLKNTLNIKPGGTNSGVLEQSYPRNFLGNHVLNRPRPAGPSGYEGGFYDQMSYRNFS
PNHRPRFPGPVGRANGFFEDPSYLSSNFMPRGASGNPRYAPSPYELQSPRQNFRMQDRHS
YQDQYHSMRNEMSVLTIESGSRTRPYSAVPRMPNSGQLSNVRPPPFTPSVGPLPSPPPQW
INKPARGTTSMHLKHQETLKGPGYEKQVKQVYQIKSRPTQSPQETGTQH
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
gattctgataatttgttgcaattacttggtatatctccccgtttctctagtgtttttcct
atagttaggtactacctttatatcagagttttcttctccaccttgcagcctgcaccagca
acttacgatgacgtattcaaatcaatttttgtctacattgaccatcttttctcattagtc
cgtccaagaaaactcctctatatggctattgatggagtggctcctagagctaagatgaac
cagcagcgaaccaggcgttttagagccgctaaagatgccgctgaagctgaagctgaagaa
aaaaggttgagggaagagtttgagatggaggctgctagtttattgcctacaggaaagcct
gagacatctgattcaaatgttattactcctggtactccatttatggcagtactagcagta
gctcttcagtattatatacaatcgaggttgaataaaaatgcaggctggcggtttaccaag
gttatcctttctgatgctaatgttcctggtgagggtgaacacaaaattatgtcctacatc
cgcttgcaacgtaaccttcctggcttcgacccaaatacccgtcattgtctttatggccta
gatgcagatctgattatgttgtctcttgctactcatgaagtccatttttcaatattgagg
gaggtgattacatcaccaggtcagcaggagaagtgttttgcctgtggtcaggttggacat
cttgcagctgattgtcgcggtacaaacggaaaccaaggcgaagatggaaagggtgtgaat
gaaacacctattcacaagaagaaatatcagtttctcaacatctgggtgttgcgagagtat
ctgcaatatgatttggagatttacaaccctccatttcggatagactttgaaagggtggtg
gatgattttgtttttttgtgtttttttgttggaaacgattttcttccccatatgccaaca
ctggagattcgagagggtgccatcaatctgctgatgtgcatctatagaagagagtttaca
acaatgggtggttatcttacagatgcgggtgaggtgtttttggatagagtagaacatttt
attcaggcggcagcagtttatgaagaccaaatctttcaaaagagagctaggataaagcag
tcaatagaaaataatgaaagagcaagaaatgaggttaatgctcagccacagcctccggcg
gaggacaaggtgaagttaggggagcctggatacaaggaaaggtactattccgagaaattt
ggtgtatcaactgcagagggtattgatgaagtcagacaagatgtagttcagaagtatgtg
gaaggattatgttgggtttgccggtattactaccaaggtgtttgctcgtggcaatggttt
tacccatatcattatgctccatttgcttctgacctcaaaggtctggcggacttggaaatt
actttcttcccaggggaaccatttaagccctttgatcagctaatgggtgttctgccagct
gcaagtgcaaatgctcttcctgaaaagtacaggatgctaatgatggatccatcatcgcca
atttctgatttttacccaacagattttgaacttgacatgaatggaaagcgttttgcatgg
caggctgttgtaaaattgccgttcatcgacgagaagaagttagttgctgaaactaaaaag
cttgaagacacgttgtcggaagaggagcaactcaggaacagtgtaatgttcgatttgctc
tatgttcatcatcaccatactttggctccatatatcatttcgtactatcatcacaataat
aaggtgcccccaggggaacaaaggccatggctaattgatgcaaatctgagtggtggaatg
aatggattcatttggttatctgagcggaatggcctgagagatagggtttgttccccactc
aatggattggaagatatttcaaataataagattttaaatattacctttctgaatccagta
cttcataagcatattccgaagcctccagaaggagtatatatgcccaaaaagattttgaga
gctgttgatataaaacctttccctgtattatggcatgaagatcatggtacccggcgtcag
ctgggcaaagataggggtccagtacctggggctatagcagggccttctctgggagaagca
gcacatcggttgcttaagaacacattgaatatcaaacccggtggaacaaattctggagtg
ttggagcaatcatatcctcgaaatttcctcggcaaccatgttctgaatagaccaaggcca
gctggaccgtctggctatgaaggtggattttatgatcaaatgagttacaggaatttttct
cccaatcaccgcccacgatttccaggaccagttggccgcgcaaatggtttttttgaggat
ccttcttatttatctagcaattttatgcctcgtggtgcatctggaaatcccagatatgct
ccatccccttatgagttgcaaagccctaggcaaaatttcaggatgcaagacaggcattca
tatcaagatcagtatcatagcatgaggaatgaaatgtctgtgttgacaattgaaagtggt
tcaagaacgaggccttattcagctgtgccaaggatgccaaattcaggacaactttctaac
gtccgcccaccgccattcacaccaagtgtgggtccacttccttcacccccgccgcagtgg
attaataaacctgcaaggggaactacatcaatgcacttaaagcatcaagagactttaaaa
gggccggggtacgagaagcaagtcaagcaggtttaccaaatcaaaagccgaccaactcag
agtccccaagaaacaggaacacaacattaa
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