Nicotiana tabacum (common tobacco): 107827172 Help Entry 107827172         CDS       T04643                                  Name (RefSeq) DNA ligase 4-like   KO K10777   DNA ligase 4 [EC:6.5.1.1] Organism nta  Nicotiana tabacum (common tobacco) Pathway nta03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:nta00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     107827172  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:nta03400]     107827172 Enzymes [BR:nta01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      107827172 DNA repair and recombination proteins [BR:nta03400]  Eukaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     DNA Ligase 4 complex      107827172 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase BRCT_2 DNA_ligase_IV Motif Other DBs NCBI-GeneID:  107827172 NCBI-ProteinID:  XP_016509744 UniProt:  A0A1S4D953 LinkDB All DBs Position Un AA seq 1117 aa AA seqDB search MATSAVDGGGSSIGGEDIKFSVMVSLFQWIQKSKSSAQKRSKFRKFLDAFCRKPQDNFAA MRLILPGLDRERGSYGLKEHVLATCLIDALAMSRDSDDARRLLNWRKGGPKTGSNAGNFS LVAAEVLQRRQGMASAGLTIKELNEFLDHLASSENRAEKTSILSDLIRKTNAQEMKWIIM IILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKAVRP QLALRVSNASAAWKKLHGKEVVVECKFDGDRIQIHKNNSDLNFFSRNFLDHQEYAHGMLD VITQNILVDKCILDGEMLVWDASMNRFAEFGSNQEIAKAAREGLDSDRQLCYIAFDILYV GDTSVIHRSLKERQEILQEVVKPIKGRLEILVPNGGLNAHRPSAGEPCWSIIAHSVDDVD KFFKETVENRDEGIVLKDLTSKWEPSDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRH GGEVAQFLVGLAERPAPNTYPRRFISFCRVGTGVSDEERNTIVTRLKPYFRKYEYPKQAP PAFYQVTNNAKERPDVWVESPEKSIIVSITSDIRTIRTEVFAAPYSLRFPRIDRVRYDKP WHECLDVQSFVDLVHSSNGTTQREADYGIGQDHEPKATIRSSRKRGKKNVSAVPSHFVQT DVSHIKGIKFQAAKLHGDVIHCSWLFDCCLQKRLLPLQPKYFLFLSDSTKRKLEAEVDEY SDSFYSDLSVKDIRKLLSDIEHSEYSKTVEYYKKKYCPKDKWARFHGCCIYFFIPEQCLK YSDCKALVELATRRMKVEISVGGGKVGGNLCHATHVVVMSLPDFDVNFNEVLNSFSEAEK HVLYNTKLHVVRARWLEDSFKEDQKLHEDSYSLKPSNFQMSISEKRHDKLRGKTVKCKRA SSPDNHGVQIKAEGISDQCQAITLPKGDRKRNRLRPTGTATAKAKPAINMPRRVRRKATN RRAKIHENESDESATSGEHLHNGESDGAAGTRGSHENVAEHGSGIQNKDVADDLELSPHG ETFLQGTSECSRSRERLDEAHETSYGSGNIASGKLEDPVDPVQAMLLHMIPHLDSKPSQS VDSLVKDDKPEADANPSPKKKKKVSYKDVAGELLKDW NT seq 3354 nt NT seq  +upstreamnt  +downstreamnt atggcgacttccgccgtagatggtggtggtagtagtattggcggagaagacataaagttc agcgtaatggttagcctattccagtggatacagaagagcaaatcatcagcgcagaagcgg tccaagttccggaagtttctagacgccttctgcaggaagcctcaggacaatttcgctgct atgcggctcattcttcctggtctcgaccgagagcgtggctcttatggactcaaagagcac gtgcttgccacgtgcctcattgatgcccttgccatgtcccgtgactccgatgatgcccgg cgtctcctcaactggcgtaaaggcggccccaaaactggctccaatgccggaaacttctct cttgtcgccgccgaggtcctccagcgcagacagggaatggcctctgctgggctaacaatt aaggaactaaatgaattccttgatcacttggcgtccagtgaaaacagagcagagaagact tcaattctgtctgatctcatcaggaaaacaaatgcgcaagaaatgaaatggattataatg ataattctgaaagatcttaagttgggaattagtgaaaagagcatcttccatgaattccat cctgatgcagaggacttattcaatgtcacatgcgatttaaaactagtttgtgaaaagtta agggacagaagtcaacggcataaacgccaggacattgaagttggaaaagcggtccgccct cagctggctcttagggtcagtaatgcatctgctgcgtggaaaaagcttcatgggaaggaa gtagttgttgagtgcaaatttgacggggatcgtatccagattcataaaaataattctgac ctaaacttcttctcaagaaactttcttgatcatcaagagtatgctcatggaatgttagat gttattacacagaatattcttgttgacaagtgcatacttgatggtgagatgctggtttgg gatgcatcaatgaaccgctttgcagagtttggttccaatcaagaaatagcaaaggctgca agagagggtcttgatagtgataggcagttgtgctacattgcattcgacattctttatgtt ggggataccagtgttattcaccgaagcttgaaggaacgtcaggagattctccaggaagtt gtgaagcccataaaaggccgtttagaaattttagtccctaatggcggtcttaatgctcat cgtccttctgcaggggagccatgttggtcgatcattgctcatagtgttgacgatgttgat aaattctttaaagaaactgttgagaacagagatgaaggaattgttttgaaagacctaact tcaaaatgggaacccagtgatcggagtggaaaatggctaaagttgaagcctgaatatgtt cgagctggctctgatttggatgttcttattattggaggctactatggttctgggcgccat ggaggagaggtagctcaatttctggttggccttgcagagcgtccggctccaaatacatat cccagaaggttcatttctttttgcagagtgggcactggagtttctgatgaggaacgtaat actatagtaactcgattaaagccctatttcaggaagtatgagtacccgaagcaggcacca ccagctttttatcaagtaacaaataatgcaaaagagcgaccagacgtgtgggttgaaagt ccagagaaatccatcattgtttcgattacaagtgacattagaacaataagaactgaggta tttgctgctccatacagcttgagatttccacgtattgatcgagtgagatatgacaagcct tggcatgagtgtcttgatgtgcaatcatttgttgacctggtacattcgagcaatggtacc acacagagggaggcagattatggaattgggcaggatcatgaaccaaaggccaccattagg tcgtcaagaaaacgagggaaaaagaatgtttctgcagttccttctcattttgttcagact gacgtgtctcacatcaagggtatcaagtttcaagctgcaaaacttcatggagatgttatt cactgctcttggctctttgattgctgtctgcaaaagaggctccttcctttacagccaaag tattttcttttcctttctgattcaacaaagagaaagttggaagcagaagtggatgaatat tctgattctttctactctgacctcagcgtcaaagacattagaaagcttttgagcgacata gaacactccgaatactccaaaactgttgagtactacaagaaaaagtactgtcccaaggat aaatgggctcgatttcatggttgctgcatttactttttcattccagagcagtgtttgaaa tattcagattgcaaggctttagtggaactcgctacgagaaggatgaaagttgaaatttct gtgggtggtgggaaagttggtggcaatctttgtcatgctacccatgtggtggtcatgtct ctaccagactttgatgtaaatttcaatgaagttttaaatagtttctcagaggcagagaag catgttttgtacaatacaaagctgcacgttgtcagggcaaggtggttggaggattccttt aaagaggaccagaagttgcacgaggatagttacagcctaaagcctagcaattttcaaatg tcaatctcagagaagagacatgataagctaagaggaaaaaccgtaaagtgcaaaagagca tcttcccctgataatcacggagtacaaatcaaagcagaaggaatttcagaccagtgccaa gccatcacgctacctaagggggatagaaagagaaatagattaagacctactggtactgct acagcaaaagcaaaaccagcaatcaacatgccacggagagttagacgcaaggccacaaat agacgtgctaagattcatgaaaatgaatccgatgaaagtgccacttcaggtgaacacctt cataatggtgagagtgacggggctgctgggactcgtggaagccatgaaaatgttgcagag catggctcaggaattcagaataaggatgttgcagatgatttggaattgtcaccacatggt gaaacatttctacaaggcacttctgaatgcagtaggagccgtgaaagattggacgaagct cacgaaacttcatacggaagtggaaatattgccagtggtaagctggaagaccctgttgat ccagtccaagctatgttattgcatatgataccccacctggatagtaagccaagccagagt gtggacagtcttgtaaaagacgacaaaccagaggcagatgctaatcctagtcctaaaaag aaaaagaaagttagctataaagacgtagctggtgaattgctcaaagattggtga

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