Afipia carboxidovorans OM5 (Mississippi): OCAR_6062
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Entry
OCAR_6062 CDS
T00783
Name
(GenBank) RND efflux system, outer membrane lipoprotein, NodT
KO
K18139
outer membrane protein, multidrug efflux system
Organism
oca
Afipia carboxidovorans OM5 (Mississippi)
Pathway
oca01501
beta-Lactam resistance
oca02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
oca00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
OCAR_6062
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
OCAR_6062
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oca02000
]
OCAR_6062
01504 Antimicrobial resistance genes [BR:
oca01504
]
OCAR_6062
Transporters [BR:
oca02000
]
Other transporters
Pores ion channels [TC:
1
]
OCAR_6062
Antimicrobial resistance genes [BR:
oca01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
OCAR_6062
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
OCAR_6062
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
OCAR_6062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Vps54_N
Motif
Other DBs
NCBI-ProteinID:
ACI93179
UniProt:
B6JI36
LinkDB
All DBs
Position
1998811..2000349
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AA seq
512 aa
AA seq
DB search
MGQLALGFGSRGWGDVLPRHAAHLRALRISATRVCAAGAVAVLLAGCIMKQDLPDLALDI
PVAYQKDATPQRQDAPPTLDWWRGFRSAELTQLMEEAQRVNLDITAATARLLQADAMTRT
AGAALLPTLDANASATRSKSSSGYLNNGTVAARGTINTYSTSLSASYEIDLWGKNRDALL
AAEESANASRYDRDTVALTAMASVANAYFQVLAAQDRIATAERNIASAKRIYDAIKARVD
AGTGSDLDLAQQESLLANQRAAVPPLRQTLTQNLNILATLVARPPERVHIRGGSLGRVSA
PRVTPGLPSELLIQRPDIRRQEAQLASATANVGSARAQFFPSIQLTGQGGYQSAALSALF
MPQSAFFNLAAGLTQPIFDAGRIQANFDLTKAQQDELLQTYRKTVISAFSDVNTALDAIR
QTAQRLRLQRVVVASSRRAFKLSEDQLRAGTADIITVLNTQQTLFQAEDTLLQAQLAWLQ
SYVSLFQALGGGWEPRVEQRTVTTMREPGNAL
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaactggcgcttgggttcggatcaaggggttggggtgacgtgctgccacggcac
gcggcgcacctccgtgccctgcgcatctccgccacgcgtgtctgcgcggccggtgcggtc
gcagtcctgcttgcaggctgcatcatgaagcaggacctgccggacctcgcgctcgatatt
ccggttgcgtaccagaaggacgccacgccgcaacggcaggacgcgccgcccacgctcgac
tggtggcgcggcttccgctcggccgaactcacgcagttgatggaggaggcgcaacgcgtc
aacctcgatatcactgccgcgaccgcacgccttctgcaggccgatgcgatgacgcgcacg
gcaggcgcggcgctactgccgacactcgatgccaatgcatccgcgacgcgctcgaaatcg
tcatccggctatctcaacaatggcaccgttgccgctcgcgggacgatcaacacctattcg
acctcgctcagcgcgagctacgagatcgacctgtggggcaagaaccgcgacgcgctgctc
gccgctgaagagagcgccaatgcgagccgctacgatcgcgacaccgtagcgctgacggcg
atggcgagtgttgccaatgcctacttccaggtgctggcggcccaggaccggatcgcgact
gccgagcgcaatatcgcgagcgccaagcgcatctatgacgcgatcaaggcgcgggtcgat
gcgggcacgggctccgacctcgatcttgctcagcaggaaagcctgctggccaaccagcgt
gcggcggtgccgccgttgcggcagacgctgacgcagaacctcaacatcctcgcgacgctg
gtggcgcggccgccggagcgcgtgcacattcgcggcggctcgcttgggcgtgtttcggcg
ccgcgcgtcacgccgggcctgccgtccgaacttttgatccagcgcccggacatccgccgt
caggaggcgcagttggcctcggcgaccgcgaatgtcggcagcgcgcgggcgcagttcttt
ccgagcattcagttgaccgggcaaggcggctaccagagcgcggcgctgtcggccctgttc
atgccgcaatcggcgttcttcaacctggctgcgggactgacgcagccgatctttgacgct
ggccgcatccaggccaatttcgatctgaccaaggcgcagcaggacgagttgctgcagacc
tatcgcaagacggtgatctcggcgttctcggacgtcaacaccgcgctcgacgcgatccgg
cagacggcgcaacgcctgcggctgcaacgcgtggtggtggcctcctcgcggcgggcgttc
aagctgtcggaggatcagttacgggcgggcacggccgacatcatcaccgtgctgaatacg
cagcagaccctgtttcaggcggaggataccctgctgcaggcgcaacttgcgtggctgcaa
tcctatgtcagcctgttccaggcgctgggcggcggctgggaaccgagagtggagcagaga
acggtgacgacgatgagggagcccgggaatgctctttaa
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