Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139388283
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Entry
139388283 CDS
T10872
Name
(RefSeq) double-stranded RNA-specific adenosine deaminase-like isoform X1
KO
K12968
double-stranded RNA-specific adenosine deaminase [EC:
3.5.4.37
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04622
RIG-I-like receptor signaling pathway
ocla04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
139388283
04623 Cytosolic DNA-sensing pathway
139388283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139388283
Enzymes [BR:
ocla01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.4 In cyclic amidines
3.5.4.37 double-stranded RNA adenine deaminase
139388283
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
139388283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
A_deamin
dsrm
z-alpha
DSRM_2
Motif
Other DBs
NCBI-GeneID:
139388283
NCBI-ProteinID:
XP_070990962
LinkDB
All DBs
Position
3:13376223..13399261
Genome browser
AA seq
1378 aa
AA seq
DB search
MSRGRGGPPIEHYHRPPLPQLQAKQQYYRAGPLGFNPRAPPQQAPHPNVHSYLGPVPPLV
PPSAHSQPLYPSVPPPPGHSPALSQQSSCPSGPNSFRQQQVHFLRGQNTEAPQFRVSPRG
GAQSLGRGGLNGLYNESNQTQAGYSRYSQNSSRGRGGYSSERGRGNGRDFGYPHCQGPPR
GPTGPRFWNQKQTSTQKQGFNRQWSLHADCADGPSFSEGFQSLSLDRERSYRGRVDRGDN
FDKASVGSSNNSNNKSVPTFQPPDIREQVLQALADLSPGEKLQAKCLAKTLRLPKKFINQ
ALYGLERDKKASKHGESPPEWTVYVEPQEEPESRDSDPESPRSQPREHPVESQERPSEED
CSHFLSVKEEDVAIDAEIQQIEAQGPEGDKEEDYYVESDSHSSSSEPSESYRQHSQSQTQ
QPSINSSSNEELDLDLDESDMADCGSNQKELILQYLLEAGEATALVISKNLGLRGAKQVN
PTLYAMEKQGDVSRNAEVTPHIWELSVHRRERMERSLKAERSAPAKVEGMGSGFQAVPPG
LECLEANAEAEDESNGGQWATDDIPEFLNAISRDGGGTVAVSLAAPPPQNLRAKLQEVKA
KNPVSGLMEFAQYQGHNCEFLLLDQSGPSHDPRFRMQVMLDGRLFPVAEASNKKVAKKDA
AAATLRILLREIEGGGAEEGLTAGVDQAMDPTSDVPEVVEGPPQALSRSLPGGKNPVSML
MEYSQRTGNPIEFINTGQEGPPHDPRFMFRVKIGESLCAESSAPSKKAARQLAAEEAVKE
LMADGRLQLNKPQFPLCLSGDEGGFMPACPSLPPLTEEELRSAHEAGVGDLISHLNNNAV
SGLLEYARARGFAAEIRLVGQSGPPHEPKFTYQAKLGGRWFPPVCASNKKQGKQEAADAA
LRVLIGEAEKAARTGELTPAELPLSGGTIHDQIAMLSHQRFNALTTRIQHSLLGRKILAT
IVMKRGEGLGTVVSLGTGNRCVKGEELSLKGDTVNDCHAEIISRRGFIRFLYAELLKHCE
GSEDSIFEPAEENKLRIKPDTTFHLYISTAPCGDGALFDKSCSEDAGDGQGHQPLFENAK
QGKLRTKVENGEGTIPVESSTIVPTWDGIQHGERLRTMSCSDKILRWNVLGLQGALLSHF
LHPIYLASITLGYLYSHGHLTRAVCCRLARDGEAFSKSLPAPYTLNHPEVGRVSVYDSTR
HTGKTKESSVNWSQPDHITVEVLDGTKGKLDGYAPRTTTRTRPSDLIHPHPDSSTSPKLD
VSRVSKSNIFRQFRSLCQQCGRQDLLALPSYAQAKMAAMSFQVAKQQFFDALGSHGYGAW
IGKPLEEKSFDEAAASDGQGAGSVANSNQGYNNNNSYGSTTTDYNSSQWGSSAYTQAM
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaggacgaggagggccccccatagagcattaccaccgaccccctctcccccaa
ctgcaggctaagcaacaatactacagagctggacccctgggatttaaccccagagccccc
ccgcaacaggccccacacccaaacgtccattcatacctgggcccagttccccctctagta
ccacccagtgcccactctcagcctctctacccctctgtccctcccccacccggtcacagc
ccagccctgagtcagcagagctcttgtcccagtggtcctaactccttcaggcagcagcag
gtccacttcctgaggggacagaacactgaggctccccagtttagggtgagccccagagga
ggggcgcagagcttgggtcgagggggactgaacggactctataacgaatcgaaccagacc
caggcagggtacagcaggtactcccaaaacagctctagggggagagggggatacagcagt
gagcgaggcagagggaacggtagggacttcgggtacccgcactgtcagggaccccctaga
ggaccaaccggccctagattctggaaccagaagcagacttcaacacaaaagcaaggcttc
aacagacagtggagccttcatgcagactgtgctgacgggccgtctttctcagaaggcttt
cagagtttatccttagacagagagaggtcctacagaggaagagttgaccgaggcgacaac
tttgacaaagcttctgttggtagtagtaataattcaaacaacaagagtgtccctacattt
cagccacccgacatccgagagcaagttttgcaagccttggcagatttgagtcccggtgag
aagctacaagcaaagtgtttggcgaaaacgttgcggttgcccaaaaagtttatcaaccag
gccctttacggtctcgagcgtgataagaaagcttcaaaacacggtgaaagtcctccagag
tggactgtctacgtagaaccacaggaagaaccggaaagtagagattctgatccggaaagc
ccacgttcccaaccgagggaacatccagtggagtcacaggaaaggccttcagaagaagat
tgctctcacttcctgtctgtgaaggaggaggacgttgccatcgacgctgagatccagcaa
attgaagcgcagggtcctgagggcgacaaagaggaagattactacgtagaatctgattca
cactcctcttcctcagaaccatctgagtcatatcggcaacattcccagtcccaaacccaa
caacccagtatcaacagcagcagtaacgaagagcttgacctagaccttgacgagagcgac
atggcggactgcggcagtaatcagaaggagttgatcctgcagtatctgctggaggcaggg
gaggccacggccctggtgatctccaagaacctgggcctgaggggcgccaagcaggtcaac
cccaccctgtacgccatggagaagcagggcgacgtgagccgcaacgcagaggtgacccct
cacatctgggagctatctgtccatcgcagggagaggatggagaggagcctcaaagccgag
cgcagcgcccctgcaaaggtcgaaggaatggggtccggattccaagcggtgccacccgga
ttggagtgtctagaggccaacgctgaggcggaggacgagtcgaacggagggcagtgggcg
accgacgatatccccgaattcctcaacgccatcagccgggatggaggggggacagtagca
gtctccctggcagcgcccccacctcagaacctccgtgccaaactccaggaggtgaaggcc
aagaaccccgtcagcggcctgatggagtttgcccagtaccagggacacaattgcgagttc
ctgctcctcgaccaatcagggccctcacatgaccccagattccgtatgcaggtcatgctg
gacggcaggttgtttcctgttgctgaggcatctaataaaaaggtggctaagaaagatgct
gccgcagcaaccctgaggattctgctgcgtgagatagaggggggaggggctgaggagggg
ctcactgcaggggtggaccaggccatggaccccacctctgacgtccctgaggtggtggag
ggtccgccccaggccctgtcccgttccctgccggggggtaagaaccccgtgtccatgctg
atggagtacagtcagcgcactggaaaccccattgagttcatcaacactggacaggagggc
ccacctcacgacccacggttcatgttcagggtgaagatcggggaaagcctgtgtgctgag
agctcagcccccagtaagaaggctgccaggcagctggctgcagaggaggcagtcaaggag
ttaatggccgacgggagactgcagctcaacaagccccagtttcccctgtgtctgtctggt
gatgaagggggcttcatgcccgcttgcccctccctgcccccgctgacagaggaggagctg
cgttctgcccacgaggcgggggttggtgacctcatcagccacctaaacaacaacgccgtt
tcaggtctgctggagtacgcccgggccaggggcttcgctgcagagatacgactggtcggg
cagtcaggaccaccgcacgagcccaagtttacctaccaggctaaactagggggtcgctgg
ttccctcctgtctgtgcttccaataagaagcaagggaaacaggaagcagctgatgcagct
ctgagggttctgattggagaggcagagaaggctgcccgcaccggggaactaacccctgca
gagctgccactgagtggtgggacaatccatgaccagatcgccatgttgagtcaccagcgc
ttcaacgccctcaccacacgcatacagcacagtcttctgggaaggaagatcctcgccacc
atcgtcatgaagaggggggaagggctggggaccgtggtcagtctgggaacaggaaatcgc
tgtgttaaaggggaggagctgagtcttaaaggggacaccgttaatgactgccacgcagaa
atcatctccaggagaggatttatcaggtttctatatgctgagttgctgaagcactgtgaa
ggatcagaggacagcatatttgagccagctgaggagaacaagctccggatcaaacctgac
accaccttccacctctatatcagtactgctccgtgcggagacggggcgttgtttgataag
tcgtgcagcgaggacgcgggggacggccagggccaccagcccctgtttgagaacgccaag
cagggcaagctgcgcaccaaggtggagaatggtgagggcaccatcccggtagagtcatcg
accatcgtgcccacctgggacggcatccagcacggcgagcgtctgaggaccatgagctgt
agcgacaagatccttcgctggaacgtcctgggtctgcagggagccctgctctcccacttc
ctccatcctatctacctggcttcaatcaccctgggctacctgtacagccatggccacctg
acacgtgctgtctgctgccgattggccagagacggcgaagccttctccaagagtctacct
gctccctacacactcaaccaccccgaggtgggcagggtgagtgtgtatgactcgacgcgt
cacacagggaagaccaaggagtccagcgtgaactggagccagccagaccacatcactgtg
gaggtgctggatgggaccaagggcaaactggacgggtacgcaccccgcaccacaactaga
accagaccctcagacctcatccaccctcatccagatagcagcaccagccccaaactggac
gtgtcgcgggtctccaagtccaacatcttccgtcaattccggtcgttatgccaacagtgc
gggcgccaggacctgctggctctcccgtcttacgcccaagccaagatggccgccatgtcc
ttccaggtcgccaagcagcagttcttcgatgcgctcggtagccatggctacggtgcctgg
attggcaagccattggaggagaagagctttgacgaagcggcggcctccgatggccaaggg
gcaggaagtgttgctaatagcaaccagggatacaacaacaacaatagctatggaagtaca
accactgactataacagcagccagtggggtagtagtgcgtacacacaggccatgtag
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integrated database retrieval system
