Ochotona princeps (American pika): 101517443
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Entry
101517443 CDS
T07609
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101517443 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opi03041
]
101517443 (EFTUD2)
Spliceosome [BR:
opi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101517443 (EFTUD2)
Complex C
U5 SnRNP specific factors
101517443 (EFTUD2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
101517443
NCBI-ProteinID:
XP_004597338
LinkDB
All DBs
Position
19:7950425..7989197
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDEDDDDIGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAMVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggatactgacttgtatgatgagtttggaaattatattggaccagagcttgattctgat
gaagatgatgatgaattgggcagagagaccaaagatcttgatgagatggatgatgatgag
gacgacgatgacataggagaccatgatgaagatcaccctgggatggaggtggtgctacat
gaggataagaagtactaccctacagcagaggaggtgtatgggccagaggtggagaccata
gttcaggaggaagatacccagcctctcacagagcccattattaagccagtgaagaccaag
aagttcactctgatggagcagacattacctgtcacggtgtatgaaatggatttcttggca
gatctgatggataattcggaactcatcagaaatgtaaccctttgtggccatctccatcat
ggcaagacatgctttgttgattgtttgatcgagcagacacatccggaaatcagaaagcgc
tatgaccaagatctgtgctatactgacatcctcttcactgagcaggagagaggtgttggc
atcaagagcactcccgtgacagtggtcttgccagacaccaagggaaagtcttacctcttc
aatatcatggacaccccaggacacgtgaatttctcggatgaagtcacagccggcttgcgc
atttcggacggggtggtgcttttcatcgatgctgctgagggggtgatgctgaatacggag
cggctgatcaagcacgcagtgcaggagaggctggccgtcaccgtgtgcatcaacaagatt
gatcggctgatcctggagctgaagctgcctccaaccgatgcctattacaagctgcgccac
attgtggatgaggtcaatggattaataagcatgtattccaccgatgagaacctgatcctg
tccccactgctgggcaacgtctgcttctccagctcccagtacagcatctgcttcacgctg
ggctcctttgccaagatctacgctgacaccttcggtgatattaattaccaggaattcgct
aaaagactctggggtgatatctacttcaaccctaagacgcgaaaattcactaaaaaagcc
ccaaccagcagttcccagagaagctttgtggagtttatcctggaaccgctttataagatc
cttgctcaggtggtgggcgacgtggacaccagcctcccgaggacgctggatgagctgggc
atccacctgaccaaggaagagctgaagctgaatatccgccccctgctcaggctggtctgc
aagaagttctttggcgagttcacaggctttgtggatatgtgtgtgcagcatatcccttct
ccaaaggtgggcgccaagcctaaaattgaacatacatacactggtggtgtggattctgat
ctcggcgaggccatgagcgactgtgaccctgatggtccactgatgtgccacaccactaag
atgtacagcacggatgatggagtgcagtttcatgcctttggccgggtgctgagcggcacc
atccatgccgggcagcccgtgaaggtgctgggggagaactacaccctggaagacgaggaa
gactctcagatatgcactgtgggccgcctctggatctccgtggccaggtaccacattgag
gtgaaccgtgttcctgcaggcaactgggttctgattgaaggtgttgatcaaccaattgtg
aaaacagcaaccattactgaaccccgaggcaatgaggaggctcagattttccggccattg
aagttcaacacaacgtctgtgattaagattgccgtggagccagtgaacccgtcagaactc
cccaagatgctcgacggcctgcgcaaagtcaacaagagctatccttccctcaccaccaag
gtggaggagtctggtgagcatgtgatcctgggcaccggggagctctacctggactgtgtc
atgcatgacttgcggaagatgtactcagagattgacatcaaggtggccgacccagttgtc
acattttgtgagacagtggtagaaacgtcttccctcaagtgctttgctgaaacacccaat
aaaaagaataagatcaccatgattgccgagcccctggagaagggccttgccgaggacatt
gagaatgaggtggtccagatcacgtggaacaggaagaaactgggcgagttctttcagacc
aagtatgactgggatctgctggctgcccgttccatctgggcttttggccctgatgccacc
ggccccaatatcctggtggatgatactctgccatcggaggtggacaaggctcttcttggc
tcagtgaaggacagtatcgttcaagggttccagtggggaaccagggaggggcccctctgt
gatgagttgattcgaaatgtcaagttcaagatcctggacgcaatggtggcccaggagccc
ctgcaccggggtgggggccagatcatccccacagccaggagagttgtctactctgctttc
ctcatggccaccccacgtctgatggagccctactactttgtggaggttcaggcgcctgca
gattgtgtctctgccgtttacactgtcctggccaggcgcaggggacacgtgactcaggat
gcacccattccaggatccccgctctacaccatcaaagctttcatcccagccattgattcc
tttggttttgagactgatctccggactcatacccagggacaagctttttctctgtccgtc
ttccaccactggcagattgtacccggtgatcccctggacaagagtattgtcattcgcccc
ttggagccccagccagctcctcacctggcccgagagttcatgatcaaaacccgtcggagg
aagggcctgagtgaagatgtgagcatcagcaagttcttcgatgatcctatgttgctggaa
cttgccaagcaggatgttgtgctcaattaccccatgtga
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