Ochotona princeps (American pika): 101519494
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Entry
101519494 CDS
T07609
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101519494 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
opi03400
]
101519494 (SMCHD1)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101519494 (SMCHD1)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101519494 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
Motif
Other DBs
NCBI-GeneID:
101519494
NCBI-ProteinID:
XP_012786967
LinkDB
All DBs
Position
9:45646378..45771813
Genome browser
AA seq
1980 aa
AA seq
DB search
MAAAGDGGSGGPSVGTGEDGRGDGRRTVYLFDRREKESELGDRALQIGERSDYAGFRASV
CQTLGISPEEKFVITTTSRKEITSDNFDETVKDGVTLYLLHSVNQLLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATARNVGVRNIQIKLLFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSIHITN
DDERFLHNLIIDEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
EVRTSKEVGPFSNIDIEISMFEKGKTPKIVNLREIQDDMQTLYISKAADSFEFKAHVEGD
GVVEGIIRYHPFLYDKETYPDDPCFPSKLKDEDDDDDCFMLEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYS
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
VRTVPIAKLDRTVAEKSVKKCVEDEMARLPDRLSITWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGSKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKVIKFSVKEGKPEKFSFGPLDHPLRVGVP
FNIPLEFQDEFGHTSQLVNDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGLVNSCQGP
PHHLKVKPDSEILVIENGTAFPFQVEVLDESDNVTVQPKLIVHCKFLGAPSLPVYSVDCS
SSGTSILTGSAIQVQNIKKDQILKARIEIPSCKDVTPVEKTIKLLPSSHVSRLQIFSMEG
QKATQIKHQGEVNWTAGDVMRNLIFQMYDEGEREINITSALAEKIKVNWTPEINKEHLLR
GLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEPKHLKCELKGGRTVQMGQE
LQGEIVIIITDQYGNQIPSFSEDSLSALSIAGVGLDSSNLKTTFQENTRSICVRGVRFTP
GPPGNKDLCFTWREFSDFIRVQLVSGPPAKLILTDWPEVKESIPVINGRELQFPLTVQLC
DQWDNPALVPQVKISLIKPNSLKLIPSNQQHKTDEKGRANLGVFTVFAPRGEHTLQIKAS
CNKSTIEGPVIKLMILPDPEKPVRLNVKYDRDVSFLAGDVFTDFIITVISEDDSIIKNIN
PARISMKLWKFSNGGNRPPINAETFSCNKIKDNDKEEGCFYFRDKAIPNKVGTYCIQFGF
TMDKANILNSEQVIIEVLPNQPVKLVPEIQPATPTVSNVRSVSNRTLVKELHLNIVDEYS
NHTGINLAGTIVATIQGSDENDIDTPLFIGKVRTLEFPLMNGSAKITNLMLSENCPGKDS
TEYFIVFEPRLSSLSRTLKPYILPFMFCNDVKKQQQMAALTKEKDQLSKSITVYRSLFDA
GKQLLDEMKCQVEEAKLKETQLRNELKNHNIEIPTAQQVPHIEALLKKKMSEQEELAKRP
RRSCTLPNYTKGNRDVLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDE
TQGRQQVLPLDSIYKKNIPDWKRPLPHFRNGKLYFKPVGNPVFARDLLTFPDNVEHCETV
FGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKL
RGMVFGAPVPKQCLVLGEQIELLQQYRSAVRKLGSVNEELNDQLKYLHTPDMKKKKQELD
EQEKNLKLIEEKLGITPTRKCNDLLQPPTKVEMTECPIPAKRMRRESTRQNRRPRGDLRN
NT seq
5943 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcgatggcgggtctggcgggccctcggtggggactggggaggacggc
aggggcgacggccgcaggaccgtgtacttgtttgaccggcgcgagaaggagtcggagctc
ggggatcgggcgctgcagatcggagagcgctcggactacgcgggcttccgcgcctcggtg
tgccagacacttggcatttcacctgaagagaaatttgttatcacaacaacaagtcggaaa
gaaattaccagtgataattttgatgaaactgttaaagatggagtcactctgtacttgctg
cattctgtgaatcagctactgctaactgctacaaaggaaagaattgacttcctacctcac
tatgatacactggttaaaagtggcatgtatgaatattatgcaagtgaaggacagaatcct
ttgccatttgctcttgcggaattgattgacaattcattgtctgctactgctcgtaacgtt
ggtgttagaaacatacagatcaaattgctttttgatgaaacgcaaggaaaacctgctgtt
gcagtgatagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtat
aggttatcaaaatttacaaggcaaggtgactttgaaagtgaccattcaggatacgttcgt
ccagtgccagtaccacgcagtttaaacagtgatatttcctattttggagttgggggaaag
caggctgttttctttgttggacagtcagccagaatgataagcaagcctgcagattcacaa
gatgttcatgagcttgtgctttcaaaagaagattttgagaagaaagaaaaaaataaagag
gcaatatatagtggatatattagaaacagaaagccatctgattctattcacattacaaat
gatgatgaaagatttctgcataatcttatcattgacgaaaaggaaaaagatagctttact
gctgtggttatcacaggggtacagccagaacacatacaatacttgaaaaattatttccat
ctttggactcgacagttagcgcatatttatcattactatattcatggtcccaaaggtaat
gaagtacgtacatcaaaagaagttggacctttcagcaacattgatattgaaatttctatg
tttgagaaagggaagactcctaagattgtcaacctaagggaaatacaagatgatatgcag
acgttgtatataagcaaagcagctgatagttttgaattcaaggctcacgttgaaggagat
ggtgtagtggaggggattattcgatatcatccattcttatatgataaagaaacgtatcct
gatgacccgtgttttccatcaaaattaaaagatgaagatgatgatgatgattgttttatg
cttgagaaagcagcaagagggaaaagacctatttttgaatgtttttggaatggacgatta
ataccatatacatcagtagaagactttgactggtgtgcccctcctaagaagagagggctt
gcaccaattgaatgctacaatagaatatctggtgcactattcactaatgacaaattccag
gtcagcacaaataaactaactttcatggatcttgagctgaaactgaaagataagaacacc
ctttttacaaggattttgaatggacaggagcagcgaatgaaaattgacagagaatttgct
ttgtggttgaaggactgtcatgagaagtatgacaaacagataaaatttacactttttaaa
ggaataattacacgtcctgatcttccttctaaaaagcaaggcccctgggcaacatactct
gcaatagagtgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagaca
ctccccctcttttatggaagcatagtaagattttttctttatggtgatcatgacggagaa
gtatatgctaccggtggagaagttcaaatcgcaatggaacctcaggcattgtatgatgaa
gtaagaactgtgccaattgcgaagctggataggacagttgctgaaaaaagtgttaaaaag
tgtgtagaagatgaaatggcaaggcttcctgatagattgtcaataacttggcctgaaggt
gatgaattgttgcctaatgaaattagacctgctggcacccccattggtgcattaaggatt
gaaatactaaataaaaaaggggaagcaatgcagaaacttccaggaacaagtcatggaggg
tctaagaaactactggtggaacttaaagttatactacatacttctagtggaagtaaggaa
atcatttcgcatataagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aatattcaaaagctggggaattatacattgaaattacaagttgtattgaatgagagtaat
gcagatacttatgcaggaagaccactaccatctaaagtaattaaattttctgtgaaagag
ggtaagccagagaagttctcctttggtcctctggatcatcctttacgtgttggagttcca
ttcaatatccctctggaatttcaggatgaatttggtcataccagtcaactagtaaatgat
attcagccagttcttgaagcaagtggtttatctttacattatgaagaaataaccaaagga
ccaaattgtgtgatacgaggtgtcacagctaagggacttgtaaactcttgtcaaggccct
cctcatcatttgaaagtgaaacctgattctgaaattttagttatagaaaatggaacagcg
ttcccatttcaggtggaggttttagatgagtcagataatgtaacagtgcaacctaagctg
attgttcattgtaagtttttaggtgctccaagccttccagtgtacagtgttgattgcagt
agttctggaaccagcattttaacaggatctgctattcaagttcagaatattaaaaaagac
cagatacttaaagcaagaattgaaatacctagttgtaaagatgtcacacctgtggagaag
acaatcaagctcctgcccagtagccatgtgtccagattacagatattcagcatggaaggc
cagaaggccacccagatcaaacatcagggtgaagtgaactggacagcaggtgacgtcatg
cgcaatctgatttttcaaatgtatgatgaaggagaaagggaaattaatataacatcagct
ttagcagaaaaaatcaaagttaactggactcctgagattaacaaagaacacttgctacga
ggtctgcttcctgatgtgcaggtgccaacctctgtaaaagacatgcgctattgccaggtt
tcatttcaagatgatcatgtgtctctggaaagtgcatttacagtaagaccactccctgat
gaacctaaacatttaaaatgtgaattgaaaggaggaagaacagtacagatgggtcaggag
cttcaaggagaaattgttataataattacagatcagtatggaaatcaaattccatcattt
tcagaagattctctatctgctttgtcaattgctggagttggacttgatagttcaaatttg
aaaactacttttcaggaaaacacacgaagtatatgtgtacggggtgtcagattcactcca
ggtcctcctggaaacaaggatctttgttttacttggcgtgaattttctgactttattcga
gtacagctcgtttctgggcctccagctaaacttatccttactgactggccagaagtaaag
gagtctattcctgtgattaatggaagagaattacagttcccccttactgttcaactttgt
gaccagtgggataatccagccctggtgccacaggttaaaataagtctcataaaacctaac
agtttaaagctcattccttcgaaccagcagcataagacagatgagaagggcagggctaat
ttgggcgtgttcactgtttttgctcctcggggagagcatactctgcagattaaagccagc
tgtaacaagagtaccatagaaggacctgtaattaagttaatgattcttccagaccctgaa
aaaccagttcgtctcaatgttaaatatgacagagatgtttcctttctagcaggagatgtt
tttactgatttcataattactgttatttcagaagatgatagtattattaaaaatattaac
ccagcacgtatttccatgaaactgtggaagttttcaaatggtgggaaccgaccaccaata
aatgcagaaacatttagttgtaataaaatcaaagataatgacaaggaagaaggatgcttc
tacttcagggataaagcaattcctaacaaagttggaacatactgtatccagtttggcttc
acaatggataaagcaaacattctcaacagtgaacaggttattattgaagttctgcccaat
cagcctgtgaagttagttcctgaaattcaaccagctacaccaactgtttctaatgttcgc
tcagtttccaataggacattggtcaaagaattacatctcaatatcgtggatgaatacagc
aatcatactggaattaacttggctggtactatagtagctaccattcaaggttctgatgag
aatgatattgatactccactatttattggaaaagttagaacacttgaatttccacttatg
aatggttcagccaaaattacaaatctaatgctatcagaaaattgccctggaaaagatagc
actgagtattttattgtgtttgagcctcgactatcatctctgtcaagaactttaaaacca
tatatcctaccattcatgttttgcaatgacgttaagaagcagcaacaaatggccgcactt
acaaaagaaaaggaccaattatctaagtctattactgtgtatagaagtttatttgatgcc
ggcaaacagcttctcgatgaaatgaaatgccaagtggaagaagcaaaattaaaagagact
caattgcgaaacgaactaaaaaatcacaatattgaaattcctacagcacagcaggtacca
cacattgaagcacttttgaaaaaaaagatgtcagaacaggaagaactagctaaaagacct
agaagatcatgtactctcccgaactataccaaaggcaatagagatgttttgggaaagatt
gcacatctagcacagattgaagatgacagagctgcaatggttatttcctggcatctggca
agtgacatggactgtgtagttaccctaaccactgatgctgcccgtcggatctatgatgaa
actcaaggtcgacagcaggtgttgccccttgattctatttataagaagaatattccagat
tggaaaagacctctacctcatttccgaaatggaaagttgtattttaagcccgttggaaat
cccgtctttgcccgagatctgttaacttttccagataatgtagaacattgtgaaacagta
tttggtatgctgttaggagataccattattttggacaatctggatgcagccaatcattac
aggaaagaggttgttaaaatcacgcactgtcccacactcctgaccagagatggagatcga
attcgaagtaatggaaagtttggaggccttcagaataaagctcctccaatggataaactt
cggggaatggtatttggagctccagtaccaaagcagtgcctagtcttaggggaacaaata
gagctgcttcagcagtatcgttctgctgtgcgcaagctgggcagtgtgaatgaggaactg
aatgatcagctgaaataccttcatactcctgatatgaagaagaaaaagcaagaactggat
gaacaagagaaaaacctgaaactgattgaggaaaagctaggtataactcccacacgaaaa
tgtaatgatttattacagcccccaacaaaggttgagatgacagagtgtccaattcctgct
aaaagaatgagaagagaatctacaagacaaaatagaagaccaagaggtgacttacgaaac
tga
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