Ochotona princeps (American pika): 101520316
Help
Entry
101520316 CDS
T07609
Symbol
SLIT1
Name
(RefSeq) slit homolog 1 protein isoform X1
KO
K06838
slit 1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04360
Axon guidance
opi04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
101520316 (SLIT1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
101520316 (SLIT1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
opi00536
]
101520316 (SLIT1)
Glycosaminoglycan binding proteins [BR:
opi00536
]
Heparan sulfate / Heparin
Axon guidance molecules
101520316 (SLIT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRRNT
hEGF
LRRCT
LRR_1
LRR_9
EGF_TEN
LRR_14
EGF_DL_JAG
EGF_3
EGF_PEAR1L
JAG1-like_EGF2
EGF_Teneurin
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101520316
NCBI-ProteinID:
XP_004580064
LinkDB
All DBs
Position
18:27435050..27569163
Genome browser
AA seq
1530 aa
AA seq
DB search
MALTSRSGSRLELWLLLLWAAAWCPGASACPALCTCTGTTVDCHGMGLQAVPKNIPRSTE
RLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHVL
PELLFQNNQALSRLDLSENAIQSIPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLE
VLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPSIGLFTQCTG
PASLRGLNVAEVQKSEFSCSGQGEAGRVPTCTLSSGSCPAMCTCSNGIVDCRGKGLTAIP
ANLPESMTELRLELNGIKSIPPGAFSPYRKLRRIDLSNNHIAEMAPDAFQGLRSLNSLVL
YGNKITDLPRGVFAGLYTLQLLLLNANKINCIRPDAFQDLQSLSLLSLYDNKIQSLAKGT
FASLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGARCASPRRLANKRIGQIKSKK
FRCSAKEQYFIPGTEDYQLNSECSSDVVCPHKCRCEAGIVECASLKLTKIPERTPQSTAE
LRLNNNEISIIEATGMFKKLAHLKKINLSNNKVSEIEDGAFEGAASVSELHLTANQLESI
RSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNHITTISPGAFDTLQALS
TLNLLANPFNCNCQLAWLGDWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCEEGQE
EGGCLPRPQCPQECACLDTVVRCSNKHLRTLPRGIPKNVTELYLDGNQFTQVPGQLSTFK
YLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALKCIPLLAFQGLRSLRLLSLHGNDV
STLQEGTFTDVTSLSHLAIGANPLYCDCHLRWLSSWVKTGYKEPGIARCTGPPDMEGKLL
LTTPAKKFECQGPPTLAIQAKCDPCLSNPCQNQGTCHNDVLEGYGCACPSGYKGRDCEVS
LDSCSSSPCGNGGTCLTQKDEDAGFTCSCPIGFEGPTCGVNIDDCVEHACANGGVCVDGV
GNYTCQCPLQYVGKTCEQLVDFCSPDLNPCQHEAQCVGTPDGPRCECAPGYTGDNCSENQ
DDCGDHRCQNGAQCVDEVNSYTCLCAEGYSGQLCEIPPRLPVSKNLCEGTECQNGANCVD
QGSRPVCQCLPGFGGPECEKLLGVNFVDRDTYLQFTDLQNWPRANITLQVSTAEDNGILL
YNGDNDHIAVELYQGHVRVSYDPGSYPSSAIYSAETINDGQFHTVELVTFDQMVNLSIDG
GSPMTMDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGTSFHGCIRNLYINNELQ
DFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPVCHCEAGWGGVHCDQPANGPCHGH
KCVHGKCIPLDALSYSCQCQEGYSGALCNQAGVPAEPCGGLQCLHGHCQASASKGAHCVC
DSGFAGKLCDQESECQGEPVRDFHQVQRGYAICQTTRPLSWVECRGSCRGLGCCQGLRLK
RRKLTFECSDGTSFAEEVEKPSKCGCAPCA
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacgtcccggagtgggtcccgtctggagctctggctactgctgctgtgggca
gccgcgtggtgcccgggtgcctcggcgtgccccgccctctgcacctgcactggtactacg
gtggactgccacggcatggggctgcaagcggtccccaagaacatcccgcggagcaccgag
cgcctggaactcaatggcaataacatcacccggatccacaagaatgactttgcgggcctc
aagcagctgcgggtgctgcagctgatggagaaccagatcggagctgtggagcgtggggct
ttcgacgacatgaaggagctggagaggctccgactgaaccggaaccagctgcatgtgctc
ccagaactgttgttccagaataaccaggctctgtccagactggacctgagtgagaacgcc
atccagtccatccccaggaaggcttttcggggcgccaccgacctcaagaacctacagctg
gacaagaaccagatcagctgcattgaggaaggggccttccgggctctaagagggctggag
gtgctgaccctgaacaacaacaatatcaccaccatccctgtgtccagcttcaaccacatg
cccaagctgcggaccttccgcctgcactccaaccacctgttctgtgactgccacttggcc
tggctctcccagtggctgaggcagcggcccagcataggactgttcacccagtgcactggc
cctgccagcctgcgtggcctcaatgtggccgaggtccagaagagcgaattcagctgctca
ggccagggggaggcaggacgtgtgcccacctgcaccctctcctccggctcctgcccagcc
atgtgcacctgcagcaatggcattgtggactgccgcggcaaaggcctcaccgccatccct
gccaacctccccgagtccatgacggagctccgcctggagctcaatggaattaagtccatc
ccaccaggggccttctctccctacagaaagctgcggaggatagacctgagcaacaatcac
atcgcagagatggcgcccgacgccttccagggcctccgctccctgaactcactggtgctc
tatgggaacaagatcacagacctcccccgcggggtgtttgcaggcctgtacaccctccag
ctcctcctcttgaatgccaacaagatcaactgcatccggcctgatgccttccaggacctg
cagagcctgtcgctgctctccctgtatgacaataaaatccagagtcttgccaagggtacc
ttcgcctcactgcgggccatccagacgctgcacctggcccagaaccccttcatctgcgac
tgtaatctcaagtggctggcagacttcctgcgcaccaaccccattgagacaagtggggcc
cgctgtgccagtccccggcgcctcgccaacaagcgcatcgggcagatcaagagcaagaag
tttcgctgttcagccaaagaacagtacttcattccaggcaccgaggattatcaactcaac
agtgagtgcagcagtgatgtcgtctgtccccacaagtgccgctgcgaggctggcatagtg
gaatgtgccagcttgaagctcaccaagatccccgagcgcaccccgcagtccacagccgag
ctgcgattgaacaacaatgagatctccatcatcgaggccactggaatgttcaagaaactt
gcacatctgaagaaaatcaacctgagcaacaacaaggtttcagagatcgaagatggggcc
tttgagggtgcggcctccgtgagcgagttgcacctgaccgccaaccagctggagtccatc
cgcagcggcatgttccgtgggctggatggcctgaggaccctgatgctgcggaacaatcgc
atcagctgcatccacaacgacagcttcacgggactgcgcaacgtgcggctgctgtcactg
tatgacaaccacatcaccaccatctcacccggcgcctttgacaccctgcaggccctgtcc
acactcaatctcctggccaatcctttcaactgcaactgccagctggcctggctgggtgac
tggctgcgcaagagaaagatcgtgacaggcaacccgcgctgccagaaccctgacttcctg
cggcagattccactgcaggacgtggccttccctgacttccggtgtgaggaaggccaggag
gaaggcggctgcctgccccgcccacagtgcccccaggagtgcgcttgcttggacactgtg
gtaagatgcagcaacaagcacctgcggactttgcctaggggcatccccaagaatgtcaca
gaactgtatttggatgggaaccagttcacccaggttccaggccagctgtcaaccttcaag
tacctgcagctcgtggacctgagcaacaacaagatcagttcgctgagcaattcctccttc
accaacatgagccagctgaccactctgatcctcagttacaatgccttgaagtgtatccct
ctgctggccttccaagggctccggtccctgcgtctgctgtccctccatggcaacgatgtc
tccaccctccaggaaggcaccttcacggatgtgacctccctgtctcacctggccattggt
gccaatcccctgtactgtgactgccacctccgctggctctccagctgggtgaagactggc
tacaaggaacctggcattgcccgctgcactgggcccccggacatggagggcaagctgctc
ctcaccacacctgccaagaagtttgaatgccaaggtccacccactctggctatccaggcc
aagtgtgacccctgcttgtccaacccctgccagaaccagggcacctgccacaatgacgtg
cttgaggggtacgggtgtgcctgcccaagcggctataagggccgagactgtgaagtgtcc
ctggacagctgttccagcagcccttgtggcaatggtgggacctgcctgacacagaaggat
gaggacgctggcttcacgtgctcctgtcccattggctttgaaggaccaacctgtggggtg
aacatagatgactgtgtggagcacgcatgtgccaatgggggcgtctgtgtggatggtgtg
ggcaactacacctgccaatgtcccttgcagtatgttggtaagacctgtgagcagctggtg
gacttctgctccccagatctgaacccgtgtcagcatgaggctcagtgtgtgggcacccca
gatgggcccaggtgtgagtgtgcaccaggctacacaggggacaactgcagtgagaaccaa
gatgattgtggggatcatcgctgccagaatggggcccagtgcgtggatgaggtcaacagc
tatacctgcctttgtgctgagggctacagtggacagctgtgtgagatcccgccccggctg
cccgtgtccaaaaacctctgtgagggcactgagtgccagaatggcgccaactgtgtggac
cagggtagccggcctgtgtgccagtgcctgccaggcttcggtggtcctgagtgtgagaag
ttgcttggagtcaatttcgtggatcgggatacctacctgcagtttactgacctgcagaac
tggccccgtgccaacatcacactgcaggtctccacagcagaggacaatgggatcctgcta
tacaacggggacaacgaccacatcgccgttgagctgtaccagggccatgtgcgcgtcagc
tatgacccgggcagctatcccagctctgccatctacagtgccgagaccatcaatgacggg
cagttccacaccgttgagctggtcacctttgaccagatggtgaatctctccattgacggc
ggcagtcccatgaccatggacaactttggcaaacactacacgctcaacagtgaggctccc
ctctacgtgggagggatgccagtggatgtgaactcagccgccttccgcctgtggcagatc
ctcaatggcaccagcttccatggctgcatccgaaacctgtacatcaacaatgagctacag
gactttaccaagacgcagatgaagccaggcgtggtgcctggctgcgagccctgccgcaag
ctctactgtctgcatggcatttgccagcccaatgccaccccagggcctgtgtgccattgt
gaggctggctggggaggtgtgcactgtgaccagccagccaacggcccctgccatggccac
aagtgtgtccacggaaaatgcatacctcttgatgctctctcctacagctgccagtgccag
gaggggtactcaggcgccctgtgcaaccaggctggggtgccagcagaaccctgtgggggc
ttgcagtgcctgcatggccactgccaggcctcggcctccaagggggcacactgtgtgtgt
gactctggctttgcgggcaagctgtgtgatcaagagtccgagtgccagggcgaacccgtc
cgggactttcaccaggtccagaggggctatgccatctgccagaccacgcgcccgctttcg
tgggtggagtgccgaggctcctgccggggcttgggctgctgccagggcctgcggctgaag
cggaggaagctcaccttcgagtgcagcgatgggacatcttttgcagaggaggtggagaag
cccagtaaatgcggctgcgccccgtgcgcctag
DBGET
integrated database retrieval system
