Ochotona princeps (American pika): 101524783
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Entry
101524783 CDS
T07609
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04064
NF-kappa B signaling pathway
opi04622
RIG-I-like receptor signaling pathway
opi04623
Cytosolic DNA-sensing pathway
opi05160
Hepatitis C
opi05161
Hepatitis B
opi05162
Measles
opi05164
Influenza A
opi05168
Herpes simplex virus 1 infection
opi05169
Epstein-Barr virus infection
opi05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
101524783 (DDX58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
101524783 (DDX58)
04623 Cytosolic DNA-sensing pathway
101524783 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
101524783 (DDX58)
05160 Hepatitis C
101524783 (DDX58)
05171 Coronavirus disease - COVID-19
101524783 (DDX58)
05164 Influenza A
101524783 (DDX58)
05162 Measles
101524783 (DDX58)
05168 Herpes simplex virus 1 infection
101524783 (DDX58)
05169 Epstein-Barr virus infection
101524783 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
opi04054
]
101524783 (DDX58)
Enzymes [BR:
opi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101524783 (DDX58)
Pattern recognition receptors [BR:
opi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
101524783 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_25
CCDC85
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
101524783
NCBI-ProteinID:
XP_004581116
LinkDB
All DBs
Position
1A:34729478..34776139
Genome browser
AA seq
925 aa
AA seq
DB search
MTAEQRKNLEAFSDYVRRTLDPTYILSYMNPWLREDEMQYIQAEKNNKGPLEAASLFLKY
LLQLQEEGWFRGFLDALSHAGYSGLHEAIVDWNFKKIEQLEQHRLLLKRLQPVFKDKINP
IEILPEISDCIINQEYEEIMQVCTNRGRMAGAEKLVECLTRSDKENWPKTLQLALENVNN
EFSKLWMAEGDAKGVETEYLEEDYVETSSIHIVYQEEPECQNLSQNSCLPAELSFAKLCS
QLKPRNYQLELASPAMNGKNTIICAPTGCGKTFVSLLICEHHLKTLPQGRKGKVVFFANH
VPVYEQQKSVFSEYFEKLGYSVAGISGATAENVPVKQVVENNDIIILTPQILVNSLKDGT
VPSLSVFTLMIFDECHNTRKQHPYNKIMFCYLDQKLGGSSELLPQVIGMTASVGVGDAKN
TAEAVEHICRLCACLDASVIATVKENLDELRQVVSTPQKIFRKVESRSTNRFKYVVSQLM
RETESLAKGIFEGFENLSQLQNREFGTQKYEQWIVEVHKACKVFQLPDKDEESRICKALY
LCTSHLRKYNDALIISEHAQMKDALEYLINFFNDVRAAGFDETEQDLTRRFEAKVKELES
ISMDPSNENPKLKELFLVLQEEYHLNPETKTILFVKTRALADALKKWIEENSQLGFLKPD
ILTGRGKTSQDTGMTLPAQKYVLEAFGSNRDHNILIATSVADEGIDIAQCNLVILYEYVG
NVIKMIQTRGRGRARGSKCLLLTSNADVIEKENINMYKEKMMNESIIELQAWDEAKFKEK
LLHLQNAEKFIRDSQQNSKPIPDKKNKKLLCGKCKTLACYTSDIRIVKDSHHTVIGNDFQ
KSFVIKPHPKPKRCGDLDKIGKIFCARADCSHDWGIRAKVNDLEIPLIKIQSFVVEDVET
GKQTNPSKWKEFNFEKIPFEATQMS
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgacagcggagcagcggaaaaacctggaagccttcagcgactatgtcaggaggaccctg
gaccctacctacatcctgagctacatgaacccctggcttagggaggatgaaatgcagtat
atccaggctgagaaaaacaacaagggcccattggaggctgcctcactttttctcaagtac
ctgctgcagctccaggaagaaggctggtttcgtggctttttggatgccttaagccatgca
ggttattctggacttcatgaagccattgtagattggaatttcaaaaaaattgaacagtta
gaacagcatagattacttttaaaacgtttacaaccagtatttaaagacaagattaatcca
atagagatccttcccgaaatatctgactgcataattaatcaggaatatgaagaaattatg
caggtttgcaccaacagggggaggatggcaggtgcagagaaactggtcgaatgccttacc
agatcagacaaggaaaactggcccaaaactttacaacttgctttggagaatgttaacaac
gagttcagtaaactttggatggcagagggagatgctaaaggtgttgaaactgaatatctt
gaggaggattacgtggaaacttccagcatacatattgtctaccaggaagagccagaatgc
cagaatctcagtcagaattcctgtctacctgcagaattatcttttgctaagttgtgcagc
cagttgaaaccaagaaattaccaactagagcttgcttctccagctatgaatggaaaaaac
acgataatatgtgcacctactggttgtggaaaaacctttgtttcacttcttatatgtgaa
catcatcttaaaacacttccacaaggacgaaaagggaaggtagttttttttgctaatcat
gtccctgtgtatgaacagcagaaatctgtgttctcagaatattttgaaaaacttgggtac
agtgtggcaggtatttctggagcaacagctgagaacgttcctgtgaaacaggttgtggag
aacaatgacatcattattttaacaccccagattcttgtgaacagtctgaaagatggaact
gtcccatcgctctctgtctttaccttgatgatattcgatgagtgccacaacactcgtaaa
cagcatccatacaataagatcatgttctgttatctggatcagaagctgggaggatcttca
gaactgttgcctcaggtcattggaatgactgcctctgttggtgtgggggatgccaagaac
acagctgaagctgtggaacatatctgcaggctgtgtgcctgtctggatgcctctgtgata
gcaacagtcaaagagaacctggacgagctgcggcaagttgtttctacaccccagaaaatt
ttcaggaaagttgaatcacggagcaccaacagatttaaatacgtcgtgtctcagctgatg
agggagacagaaagcctggcaaagggtatcttcgaaggatttgaaaatttatctcaactc
cagaatagggaatttggaacacagaaatacgaacagtggattgttgaagttcacaaagcc
tgcaaggtgtttcaactgccagacaaagatgaagagagcaggatttgtaaagcactgtat
ttgtgcacttcccatttgcggaaatacaatgatgctctcataatcagtgagcatgcccaa
atgaaagatgctctggaatacttgatcaatttcttcaatgatgtgcgagcagcagggttt
gatgagacagaacaagatctgactcggagatttgaagcaaaggtgaaggaactggaaagc
atttccatggatcccagcaatgagaatcctaagctcaaagaactcttcctcgtcttacaa
gaggagtaccacctcaatccagagacaaaaaccattctctttgtgaaaaccagagccctg
gcggatgctttaaagaagtggattgaggaaaattcccagcttggctttctgaaacctgac
atattgactggacgtggcaaaactagccaggacacaggaatgaccctcccagcacaaaag
tatgtattggaagcattcggaagcaatagagaccacaatatcttgattgccacttcagtt
gctgatgaaggcattgacattgctcagtgcaatctagtcatcctgtatgagtatgtgggc
aatgtcatcaaaatgatccaaactagaggcagaggaagagcgagagggagcaagtgcttg
cttctgactagcaatgctgatgtaatcgaaaaagaaaacataaacatgtataaggagaaa
atgatgaatgaatccatcatagaacttcaggcatgggatgaagcaaaatttaaagaaaag
cttctccatttacagaatgctgaaaaatttatcagagatagtcaacaaaactccaaacct
atacctgataagaaaaataagaaactgctgtgtggaaagtgcaaaaccctggcatgttat
acatctgatataagaatagtaaaggattcccatcacactgtaattggaaatgatttccag
aagagcttcgtgattaaaccacaccccaaaccaaagaggtgtggggatcttgacaagata
ggaaagatattctgtgccagagcagactgcagccacgactggggaatccgtgcaaaggtc
aatgatttggagattccgctcattaagattcagagtttcgtggtagaagacgttgagact
ggaaaacagacgaatccctcaaagtggaaggaatttaattttgagaagataccatttgaa
gctacacaaatgtcctaa
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