Ochotona princeps (American pika): 101525521
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Entry
101525521 CDS
T07609
Symbol
SETDB1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi00310
Lysine degradation
opi01100
Metabolic pathways
opi04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
101525521 (SETDB1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
101525521 (SETDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101525521 (SETDB1)
Enzymes [BR:
opi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
101525521 (SETDB1)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
101525521 (SETDB1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
101525521 (SETDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5604
Tudor_4
SET
Tudor_5
MBD
Pre-SET
Chromo_MORC2_6th
DUF4537
53-BP1_Tudor
Chromo
Motif
Other DBs
NCBI-GeneID:
101525521
NCBI-ProteinID:
XP_004588922
LinkDB
All DBs
Position
13:110600011..110627609
Genome browser
AA seq
1284 aa
AA seq
DB search
MSSLPGCVGLDAAAAAVQSEEIAELQQAVVEELGISMEELRQFIDEELEKMDCVQQRKKQ
LAELETWVLQKESEVALVDQLFDDASRAVTNCECLVKDFYSKLGLQYRDSSSEDEASQPT
EIIEIPDEDDEVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDL
HKGTLSQMSSELSRDGDLVVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKS
LLSGNHIAYDYHPPAEQLFVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDG
YASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEG
TWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASTLEKKQGGQLRTR
PNMGAVRSKGPVVQYTQDLTSTGTQFKPMEPPQPPPAPPAPAPSPQIGDPDMESQLAQSR
KQVAKKSTSFRPGSVGSGHSSPPSPALSESAAAGKPAANQAYRSPLSSTTSAPAPPVPPA
PPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRIRPMRNEQYRGKNPLLVPL
LYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYV
LVDRKFQPYKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFINTGPE
FLVGCDCKDGCRDKSKCVCHQLTIQATACTPGGQINPNSGYQYKRLEECLPTGVYECNKR
CKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADK
EGLEMGDEYFANLDHIESVENFKEGYESDAPCSSDSSGVDLKDQEDGNSGTEDPEESNDD
SSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSEMPAKDSRPPDLGPPHVPVPPPLV
PAGVCNPPSSEDTPKNKVASWLSCNSVTDGGFDSDSRSSFKTGEGGAGGGRGEAEKSSTS
ALGVEDEGDMKQAKKEDPDDRNKIPGITESSRNYGYNPSPVKPEGLRRPPSKTSLHQSRR
LAASAQPGADDVLTLSSSTDSEGESGTSRKPTAGQTAATAVDSDDIQTISSGSEGDDFED
KKNISGPAKRQVAVKSTRGFALKSTHGIAIKSTNMASVEKGDSAPVRKNTRQFYDGEESC
YIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNY
EVGSVEGKELLCCCGAIECRGRLL
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccctccctggctgtgtgggtttggatgccgccgcggctgccgtgcagtctgag
gagatcgccgagctgcagcaggcggtggtggaggagctgggcatctccatggaggagctc
cggcagttcatcgatgaggagctggagaagatggactgtgtgcagcagcgcaagaagcag
ctagccgagctggagacctgggtgttacagaaagagagcgaggtggccctagtcgaccag
ctctttgatgacgcctccagggcagtgactaattgtgagtgtttggtgaaggacttctac
tccaagctgggcctgcagtaccgagacagtagctctgaagatgaggcttcccagcctaca
gaaataattgagattcctgatgaagatgatgaagtcctcagcatcgattcaggtgatgct
gggagcagaactccaaaagatcagaagctccgtgaggccatggctgccttaagaaaatca
gctcaggatgtccagaagttcatggacgctgtcaacaaaaagagcagctcccaggatctg
cataaaggaaccttgagtcagatgtcgagtgagctgagcagagatggtgacctggtagtc
agcatgcggattctgggcaagaagagaaccaagacgtggcacaaaggcactctgattgcc
atccagacagttgggccagggaagaagtacaaggtgaaatttgacaacaaaggaaaaagt
ctactgtcagggaaccacattgcgtatgactaccaccctcctgctgaacagctgtttgtg
ggcagccgagtggtggccaaatacaaagatgggaaccaggtctggctctatgctggcatt
gtagctgaaacaccaaacgtcaaaaacaagctcaggttcctcattttctttgatgatggc
tacgcatcctatgtcacacagtctgaactgtatcccatttgccggccgctgaaaaagact
tgggaggacatagaagacatctcctgccgagacttcatagaggaatatatcactgcttac
cctaaccgccccatggtgctgctcaagagtggacaacttatcaagactgagtgggagggc
acctggtggaagtcgcgtgttgaagaggtggatgggagcctcgtcaggatcctcttcttg
gatgacaaaagatgtgagtggatctatcgaggctccacacgactggagcccatgttcagc
atgaagacttcttcagcctctacgctggagaagaaacaaggaggacagctccggacacgt
ccaaatatgggtgctgtgaggagcaaaggccctgttgtccagtatacacaggatctgacc
agtactggcacccagttcaagccaatggagcccccgcagcctcctccagctccacctgct
ccagctccgtcccctcaaataggtgaccctgacatggaaagccagcttgctcaatcacgg
aagcaggtagccaaaaagagcacatcctttcgaccaggatctgtgggctctggtcactcc
tcccctccgtcccctgcactcagtgagagtgctgctgctgggaagcctgcagcgaaccag
gcatatagatcacctttaagttcaacaacctctgccccagcacctccagtccccccggct
cctcccgcacccccagccttccatggcatgctggagcgggccccagcggagccctcctac
cgtgcccccatggagaaacttttctacttacctcatgtctgcagctatacctgtctgtct
cggatccgacccatgagaaatgagcagtaccggggcaagaacccgctgctcgtcccgctg
ctatatgacttccgacgaatgacagcccggcgccgggttaaccgcaaaatgggcttccat
gtcatctataagaccccctgtggcctctgcctccggacgatgcaggagattgaacgctac
ctgtttgaaactggctgtgacttcctcttcctggagatgttctgtttggatccctatgtt
cttgtggaccggaagtttcagccctataagcctttttactatattttggacatcacctat
ggaaaggaggatgttcccctgtcctgtgtcaatgagattgacacaactcccccaccacag
gtggcttacagcaaggaacggatcccgggcaagggtgttttcattaacacaggccctgag
tttctggttggctgcgactgcaaggatgggtgtcgggacaaatctaagtgtgtctgccat
cagctaactatccaggctactgcttgtaccccaggaggccaaatcaaccctaactctggc
taccagtacaaaagactggaagagtgtctgcccacaggggtgtatgagtgtaacaaacgc
tgcaaatgtgacccaaacatgtgcacaaatcggttggtgcagcatggactacaggttcgc
ctacagctgttcaagacacagaacaagggctggggtattcgctgcttggatgacattgcc
aaaggctcttttgtttgtatttatgcaggcaaaatcctgactgatgactttgcagataag
gagggcctggaaatgggtgatgagtattttgccaatctggaccatatcgagagcgtggag
aacttcaaggaaggctatgagagtgatgccccctgttcctctgacagcagtggtgtagac
ttaaaggaccaggaggatggcaacagtggtacagaagaccctgaggagtccaatgacgat
agctcagatgataacttctgtaaggatgaggacttcagcaccagctcagtgtggcgcagc
tatgccacgcggagacagacccgaggccagaaggaaaacggactctctgagatgcctgcc
aaggactcccgtcccccagaccttgggccaccacatgtccctgtccctcctcccttagtc
cctgcaggtgtctgcaatccaccttcctccgaggatacacccaagaacaaggtggcctcc
tggctgagctgcaatagtgtcaccgacgggggctttgactctgatagccgctcctccttc
aagactggcgaaggtggtgctgggggcggtcgaggggaagctgagaagtcctccacgtca
gcactgggtgtcgaggatgagggagacatgaagcaagcaaagaaagaggaccctgatgac
cgaaacaagataccaggaattacagaaagctctcgaaattacggttacaatccttctcct
gtgaaaccagaaggccttcgccgcccaccaagtaagacgagtctgcaccagagccggcga
ctcgcggcctctgctcagcccggcgccgatgacgtcctgacgctgtccagcagcacagac
agtgagggggaaagtgggaccagccgcaagcccactgctggccagactgcagccacggca
gtggacagcgatgacatccagaccatctcctctggctccgaaggggatgactttgaggac
aaaaagaacatatctggtccagcaaagcgccaggtggcagtaaaatcaactcgaggcttt
gctcttaaatcgacccatgggattgccattaagtcaaccaacatggcctccgtggaaaag
ggggacagcgcaccagttcgtaagaacacacgccagttctacgacggtgaggagtcttgt
tacatcattgatgccaagctggaaggcaacctgggccgctacctcaatcacagttgcagc
cccaacctgtttgtccagaatgtcttcgtggacactcacgatcttcgcttcccctgggtg
gccttctttgccagcaagagaattcgggctgggacagaacttacttgggactacaactat
gaggtgggcagcgtggaaggcaaggagctcctctgctgctgcggagccatcgagtgcaga
gggcggcttctttag
DBGET
integrated database retrieval system
