Oryza sativa japonica (Japanese rice): 4325074
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Entry
4325074 CDS
T01015
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4325074
09123 Folding, sorting and degradation
03018 RNA degradation
4325074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4325074
03041 Spliceosome [BR:
osa03041
]
4325074
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4325074
mRNA degradation factors
5'-3' decay
Lsm complex
4325074
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
4325074
Complex C
U2 snRNP components
4325074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
4325074
NCBI-ProteinID:
XP_015641494
UniProt:
Q5N9F1
A0A0P0VAW1
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Position
1:complement(join(38155345..38155425,38155826..38155921,38156620..38156757))
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AA seq
104 aa
AA seq
DB search
MAAAAAAAAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE
EIVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcggcagcggcggctgaggaggagatcgcggtgaaggagccgctg
gatctgatcaggctcagcctcgacgagcgcatctacgtcaagctcaggtccgaccgcgag
ctccgcggcaagctccatgcatacgatcaacatttaaacatgattcttggagatgttgag
gagatcgtgacaacagttgagattgacgatgagacatatgaagaaattgtgcgcaccaca
aaacgcactatccccttcctttttgttcgaggtgatggtgtcattttggtttctccaccc
ctccgaacggcatga
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