Oryza sativa japonica (Japanese rice): 4327916
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Entry
4327916 CDS
T01015
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2
KO
K12126
phytochrome-interacting factor 3
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04075
Plant hormone signal transduction
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
4327916
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4327916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4327916
Transcription factors [BR:
osa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
4327916
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HLH
Motif
Other DBs
NCBI-GeneID:
4327916
NCBI-ProteinID:
XP_015619034
UniProt:
Q0JNI9
LinkDB
All DBs
Position
1:complement(join(10296338..10296451,10296548..10297033,10297127..10297192,10297280..10297345,10297507..10297599,10297690..10298776,10298885..10298886))
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AA seq
637 aa
AA seq
DB search
MSDGNDFAELLWENGQAVVHGRKKHPQPAFPPFGFFGGTGGGGGGSSSRAQERQPGGIDA
FAKVGGGFGALGMAPAVHDFASGFGATTQDNGDDDTVPWIHYPIIDDEDAAAPAALAAAD
YGSDFFSELQAAAAAAAAAAPPTDLASLPASNHNGATNNRNAPVATTTTREPSKESHGGL
SVPTTRAEPQPQPQLAAAKLPRSSGSGGGEGVMNFSLFSRPAVLARATLESAQRTQGTDN
KASNVTASNRVESTVVQTASGPRSAPAFADQRAAAWPPQPKEMPFASTAAAPMAPAVNLH
HEMGRDRAGRTMPVHKTEARKAPEATVATSSVCSGNGAGSDELWRQQKRKCQAQAECSAS
QDDDLDDEPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKA
SMLDEAIEYLKTLQLQVQMMSMGTGLCIPPMLLPTAMQHLQIPPMAHFPHLGMGLGYGMG
VFDMSNTGALQMPPMPGAHFPCPMIPGASPQGLGIPGTSTMPMFGVPGQTIPSSASSVPP
FASLAGLPVRPSGVPQVSGAMANMVQDQQQGIANQQQQCLNKEAIQGANPGDSQMQIIMQ
GDNENFRIPSSAQTKSSQFSDGTGKGTNARERDGAET
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacggcaacgacttcgccgagctgctgtgggagaacggccaggcggtggtgcac
gggaggaagaagcacccgcagccggccttcccgccgttcggcttcttcggtggcaccggc
ggtggcggcggcggcagcagtagtagagcccaggagaggcagcccggcggcatcgatgcg
ttcgccaaggtggggggcggcttcggcgccttgggcatggctccggcggtgcacgacttc
gcttctggcttcggcgccaccacgcaggacaacggtgatgatgacaccgttccgtggatc
cattaccccataattgacgatgaagacgccgccgcccctgctgctctcgcagcagcggac
tatggctccgacttcttctccgagctccaggcggcggcggctgccgcggcggccgccgcg
ccgccgaccgatctcgcctctctgccagcctccaatcacaacggcgccaccaataacaga
aatgctccggttgccaccaccaccaccagggaaccctccaaggaaagccacggcggcctg
tcggttcccaccacccgagccgagccgcagccgcagccacagctcgccgcagccaagctg
cctcggtcgagcggcagcggcggcggcgagggcgtgatgaacttctcgctcttctcccgc
ccggccgtcctggcgagggcgacgctggagagcgcgcagaggacgcagggcaccgacaat
aaggcgtccaatgtcaccgcgagcaaccgcgtcgagtcgacggtcgtgcagacggcgagc
gggccaaggagcgcaccggcgttcgccgatcagagggcggcggcgtggccgccgcagccg
aaggagatgccgttcgcgtccacggcagccgctcccatggccccggccgttaacctgcac
cacgagatgggccgtgacagggcaggccgaaccatgcctgtccacaaaaccgaggcgagg
aaggcacctgaggccacggtcgcgacatcgtcggtgtgctccggcaacggagctgggagt
gacgagctgtggcgccagcagaagcggaagtgccaggcccaggcagagtgctcagctagc
caagacgatgatcttgacgatgaacctggagtattgagaaaatctggaaccaggagcacg
aaacgcagccgcacagctgaggttcacaatttatcagaaaggaggagaagggacaggatc
aatgaaaagatgcgcgctctgcaagaactcattcccaactgcaacaagattgataaagcc
tcgatgctggatgaagctatagagtacctcaaaacccttcagcttcaagtacagatgatg
tccatgggaactgggctgtgcattcctccaatgctattaccaacagccatgcagcacttg
caaattccaccgatggctcatttccctcatctcggcatgggattggggtacgggatgggc
gtcttcgacatgagcaacactggagcacttcagatgccacccatgcctggtgctcacttt
ccctgcccaatgatcccaggtgcgtcaccacaaggtcttgggatccctggcacaagcacc
atgccaatgtttggggttcctgggcaaacaattccttcgtcagcgtctagtgtaccacca
tttgcatctttggctggtcttcctgttaggccaagcggggtccctcaagtatcaggcgcc
atggctaacatggtgcaagaccagcaacaaggcatagcgaatcaacagcagcaatgtctg
aacaaggaagctatacagggagcaaatccaggtgattcacaaatgcagatcatcatgcag
ggtgacaacgagaattttaggataccctcttcagcccaaacaaaaagcagtcaattttca
gatggtaccggcaaggggaccaacgctagagagagagatggggctgaaacataa
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