Oryza sativa japonica (Japanese rice) (RefSeq): 4327916
Help
Entry
4327916 CDS
T01015
Name
(RefSeq) transcription factor APG-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa04075
Plant hormone signal transduction
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
4327916
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4327916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4327916
Transcription factors [BR:
osa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
4327916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
Motif
Other DBs
NCBI-GeneID:
4327916
NCBI-ProteinID:
XP_015619027
LinkDB
All DBs
Position
1:complement(10271006..10274298)
Genome browser
AA seq
642 aa
AA seq
DB search
MSDGNDFAELLWENGQAVVHGRKKHPQPAFPPFGFFGGTGGGGGGSSSRAQERQPGGIDA
FAKVGGGFGALGMAPAVHDFASGFGATTQDNGDDDTVPWIHYPIIDDEDAAAPAALAAAD
YGSDFFSELQAAAAAAAAAAPPTDLASLPASNHNGATNNRNAPVATTTTREPSKESHGGL
SVPTTRAEPQPQPQLAAAKLPRSSGSGGGEGVMNFSLFSRPAVLARATLESAQRTQGTDN
KASNVTASNRVESTVVQTASGPRSAPAFADQRAAAWPPQPKEMPFASTAAAPMAPAVNLH
HEMGRDRAGRTMPVHKTEARKAPEATVATSSVCSGNGAGSDELWRQQKRKCQAQAECSAS
QDDDLDDEPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKA
SMLDEAIEYLKTLQLQVQLSLTQMMSMGTGLCIPPMLLPTAMQHLQIPPMAHFPHLGMGL
GYGMGVFDMSNTGALQMPPMPGAHFPCPMIPGASPQGLGIPGTSTMPMFGVPGQTIPSSA
SSVPPFASLAGLPVRPSGVPQVSGAMANMVQDQQQGIANQQQQCLNKEAIQGANPGDSQM
QIIMQGDNENFRIPSSAQTKSSQFSDGTGKGTNARERDGAET
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacggcaacgacttcgccgagctgctgtgggagaacggccaggcggtggtgcac
gggaggaagaagcacccgcagccggccttcccgccgttcggcttcttcggtggcaccggc
ggtggcggcggcggcagcagtagtagagcccaggagaggcagcccggcggcatcgatgcg
ttcgccaaggtggggggcggcttcggcgccttgggcatggctccggcggtgcacgacttc
gcttctggcttcggcgccaccacgcaggacaacggtgatgatgacaccgttccgtggatc
cattaccccataattgacgatgaagacgccgccgcccctgctgctctcgcagcagcggac
tatggctccgacttcttctccgagctccaggcggcggcggctgccgcggcggccgccgcg
ccgccgaccgatctcgcctctctgccagcctccaatcacaacggcgccaccaataacaga
aatgctccggttgccaccaccaccaccagggaaccctccaaggaaagccacggcggcctg
tcggttcccaccacccgagccgagccgcagccgcagccacagctcgccgcagccaagctg
cctcggtcgagcggcagcggcggcggcgagggcgtgatgaacttctcgctcttctcccgc
ccggccgtcctggcgagggcgacgctggagagcgcgcagaggacgcagggcaccgacaat
aaggcgtccaatgtcaccgcgagcaaccgcgtcgagtcgacggtcgtgcagacggcgagc
gggccaaggagcgcaccggcgttcgccgatcagagggcggcggcgtggccgccgcagccg
aaggagatgccgttcgcgtccacggcagccgctcccatggccccggccgttaacctgcac
cacgagatgggccgtgacagggcaggccgaaccatgcctgtccacaaaaccgaggcgagg
aaggcacctgaggccacggtcgcgacatcgtcggtgtgctccggcaacggagctgggagt
gacgagctgtggcgccagcagaagcggaagtgccaggcccaggcagagtgctcagctagc
caagacgatgatcttgacgatgaacctggagtattgagaaaatctggaaccaggagcacg
aaacgcagccgcacagctgaggttcacaatttatcagaaaggaggagaagggacaggatc
aatgaaaagatgcgcgctctgcaagaactcattcccaactgcaacaagattgataaagcc
tcgatgctggatgaagctatagagtacctcaaaacccttcagcttcaagtacagttgtca
ttgacacagatgatgtccatgggaactgggctgtgcattcctccaatgctattaccaaca
gccatgcagcacttgcaaattccaccgatggctcatttccctcatctcggcatgggattg
gggtacgggatgggcgtcttcgacatgagcaacactggagcacttcagatgccacccatg
cctggtgctcactttccctgcccaatgatcccaggtgcgtcaccacaaggtcttgggatc
cctggcacaagcaccatgccaatgtttggggttcctgggcaaacaattccttcgtcagcg
tctagtgtaccaccatttgcatctttggctggtcttcctgttaggccaagcggggtccct
caagtatcaggcgccatggctaacatggtgcaagaccagcaacaaggcatagcgaatcaa
cagcagcaatgtctgaacaaggaagctatacagggagcaaatccaggtgattcacaaatg
cagatcatcatgcagggtgacaacgagaattttaggataccctcttcagcccaaacaaaa
agcagtcaattttcagatggtaccggcaaggggaccaacgctagagagagagatggggct
gaaacataa
DBGET
integrated database retrieval system
