Oryza sativa japonica (Japanese rice): 4331095
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Entry
4331095 CDS
T01015
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4331095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4331095
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4331095
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA_28
AAA
SMC_N
AAA_15
NACHT
AAA_25
AAA_5
PduV-EutP
AAA_18
AAA_22
AAA_24
AAA_23
AAA_33
AAA_30
SRP54
Arf
AAA_16
Rad17
AAA_14
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
4331095
NCBI-ProteinID:
XP_015625286
UniProt:
A3ACJ0
Q6K989
LinkDB
All DBs
Position
2:join(35134565..35134718,35135436..35135596,35136022..35136073,35136404..35136540,35136890..35136976,35137054..35137341)
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AA seq
292 aa
AA seq
DB search
MAGGEDEGWRRSGIEVSALQFDYDGQPPLFARFNLRIAPGSRCLLIGANGSGKTTLLKIL
AGKHMVGGRDVVRVLNGSAFHDTQLVCNGDLSYLGGSWSRAIGSAGDVPLQGDFSAEHMI
FGVDGVDPVRREKLVDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVDLD
VVTRMDLLDFFKEECEQREATIVYATHIFDGLESWATDIAYIQEGELRKSAKYSDVEELK
SAKNLLSVVESWLRSETKLPKKEHPRPETQPRRSSPFDASPFRSSRHMAYYR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcgaggacgaagggtggaggaggagcggcatcgaggtgagcgcactgcag
ttcgactacgacgggcagccgccgctcttcgcgcggttcaatctccgcatcgcccccggc
tcacgatgcctcctcatcggcgcgaacggatcaggcaagaccactctcttgaagattctt
gcggggaaacatatggttggaggaagagatgttgtccgtgttcttaatggttctgctttt
catgacacacagcttgtgtgcaacggtgacctttcctacttaggtggttcatggagtcgg
gctatcggttcagctggtgacgttcctctgcaaggcgacttctctgctgaacacatgatt
tttggagttgatggggttgatcctgttaggcgagagaagcttgttgatctactagatatt
gatctgcaatggcgcatgcataaagtctcagatggacaacgccgcagggtacaaatctgc
atgggtcttcttcatccatacaaggtactcttgcttgatgaaatcaccgttgatcttgat
gttgtgactagaatggatctccttgacttctttaaggaagagtgtgaacagagagaagca
accattgtctatgccactcatatatttgatggattggaatcatgggctactgacattgca
tacatccaagaaggtgaattgagaaaatcagcaaaatactctgacgttgaggagctaaag
agtgccaaaaacttgctgtcagttgtcgagtcatggctgcgatctgagaccaaactccct
aagaaagaacatccccgtcctgagacccagcccaggcgctcctctccatttgatgcttca
ccgttccgatcttcacgccacatggcctactaccgttga
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