Oryza sativa japonica (Japanese rice): 4331095
Help
Entry
4331095 CDS
T01015
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4331095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4331095
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4331095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
AAA_28
AAA
SMC_N
AAA_15
NACHT
AAA_25
AAA_5
PduV-EutP
AAA_18
AAA_22
AAA_24
AAA_23
AAA_33
AAA_30
SRP54
Arf
AAA_16
Rad17
AAA_14
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
4331095
NCBI-ProteinID:
XP_015625286
UniProt:
Q6K989
A3ACJ0
LinkDB
All DBs
Position
2:join(35134565..35134718,35135436..35135596,35136022..35136073,35136404..35136540,35136890..35136976,35137054..35137341)
Genome browser
AA seq
292 aa
AA seq
DB search
MAGGEDEGWRRSGIEVSALQFDYDGQPPLFARFNLRIAPGSRCLLIGANGSGKTTLLKIL
AGKHMVGGRDVVRVLNGSAFHDTQLVCNGDLSYLGGSWSRAIGSAGDVPLQGDFSAEHMI
FGVDGVDPVRREKLVDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVDLD
VVTRMDLLDFFKEECEQREATIVYATHIFDGLESWATDIAYIQEGELRKSAKYSDVEELK
SAKNLLSVVESWLRSETKLPKKEHPRPETQPRRSSPFDASPFRSSRHMAYYR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcgaggacgaagggtggaggaggagcggcatcgaggtgagcgcactgcag
ttcgactacgacgggcagccgccgctcttcgcgcggttcaatctccgcatcgcccccggc
tcacgatgcctcctcatcggcgcgaacggatcaggcaagaccactctcttgaagattctt
gcggggaaacatatggttggaggaagagatgttgtccgtgttcttaatggttctgctttt
catgacacacagcttgtgtgcaacggtgacctttcctacttaggtggttcatggagtcgg
gctatcggttcagctggtgacgttcctctgcaaggcgacttctctgctgaacacatgatt
tttggagttgatggggttgatcctgttaggcgagagaagcttgttgatctactagatatt
gatctgcaatggcgcatgcataaagtctcagatggacaacgccgcagggtacaaatctgc
atgggtcttcttcatccatacaaggtactcttgcttgatgaaatcaccgttgatcttgat
gttgtgactagaatggatctccttgacttctttaaggaagagtgtgaacagagagaagca
accattgtctatgccactcatatatttgatggattggaatcatgggctactgacattgca
tacatccaagaaggtgaattgagaaaatcagcaaaatactctgacgttgaggagctaaag
agtgccaaaaacttgctgtcagttgtcgagtcatggctgcgatctgagaccaaactccct
aagaaagaacatccccgtcctgagacccagcccaggcgctcctctccatttgatgcttca
ccgttccgatcttcacgccacatggcctactaccgttga
Oryza sativa japonica (Japanese rice): 4332655
Help
Entry
4332655 CDS
T01015
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4332655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4332655
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4332655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
Arf
AAA_29
nSTAND3
AAA
AAA_23
AAA_15
Motif
Other DBs
NCBI-GeneID:
4332655
NCBI-ProteinID:
XP_015628219
UniProt:
Q10MA7
B9F850
LinkDB
All DBs
Position
3:join(11449955..11450105,11450208..11450341,11450466..11450585,11451780..11451875,11451983..11452135,11452214..11452291,11452373..11452603)
Genome browser
AA seq
320 aa
AA seq
DB search
MAPTVEISHLSFTYPGIDGRPPPGAPPLIEDVCFSLDAGHRCLLLGSNGAGKTTILKILG
GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF
GVVGVDPQRRDELIKILDIDLAWRMHKASDGQRRRVQICMGLLKPFKVLLLDEITVDLDV
LARANLLTYLKKECEERGATIIYATHIFDGLDDWPTHIVYIARGKLQLALPLEKVKEMSQ
LSLMRTVESWLRKERDEDRRRRKERKEKGLPEFDKVTEGSRVIGDPAARAVNNGWAAGRL
ASTVAGEENFIFSSNSVLRQ
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaacggtggagatcagccacctctccttcacctacccgggcatcgacggccgc
ccgccgcccggcgcgccgccgctcatcgaggacgtctgcttctccctcgacgccggccac
cgctgcctcctcctcggctccaacggcgccggcaagacgacgatactgaagatactgggc
gggaagcacatggtggatccgagcatggtgcgggtcctgggcaggtcggccttccacgac
acggcgctcacatcatctggcgacctctgctacctaggcggtgagtggaggcgcgatgtt
gcctttgcgggctaccaggtaaatatacagatggacatttcagcagagaagatgatattt
ggtgttgtgggcgttgatcctcaaaggagagatgagcttatcaagattttggatattgac
cttgcctggcgcatgcacaaggcatccgatggtcaaaggagacgggtccaaatttgcatg
gggcttctcaagccattcaaagttcttcttcttgatgagatcacagtagatctggatgtg
ttggcaagagcaaatctattgacatatttaaagaaggaatgcgaggaacggggtgctaca
atcatctacgcaacacatatttttgacggacttgatgattggccaacacacattgtgtac
attgcccgtgggaagttgcaactagcactgcctttagagaaggtgaaagaaatgagccag
ttatctctcatgagaacagtggagagctggctgaggaaagagagagatgaggataggcgg
agaagaaaggaacggaaggagaagggcctcccagagtttgacaaggttactgaggggagt
cgggttataggtgatcccgctgccagagcggtgaacaatgggtgggcagcagggaggctc
gcctcaacggttgctggtgaagagaatttcattttcagctctaacagcgttcttaggcaa
taa
DBGET
integrated database retrieval system
