Oryza sativa japonica (Japanese rice): 4334324
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Entry
4334324 CDS
T01015
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
4334324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4334324
Transcription factors [BR:
osa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
4334324
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_IRO3
Bucky_ball
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
4334324
NCBI-ProteinID:
XP_015633319
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All DBs
Position
3:join(33403946..33404224,33404346..33404492,33404615..33404697,33404804..33405377,33405463..33405564,33405642..33405707,33405889..33405954,33406047..33406334,33406415..33406537)
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AA seq
575 aa
AA seq
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MPNPSSLLASPSPPHRNSSSSSSISIISTPATIQPDAAHGPCSLLTTSKYALRDTRGSKS
SYTRLCCCCTAAPKAEQEEETLQQELLLFGLVQVGELLEEGGIARLGSSALLSFYFLFFF
LFVPRFLASLCGLSCWFSFYFKVVNFLGGHKNRGMDGNARSAANQTKQIVTDNELVELLW
HNGGVVAQPQAAQARVVSSSGRGQSASVLTGDDTETAAWFPDTLDDALEKDLYTQLWRSV
TGDAFPAAAAAGPSSHHAPPPDLPPPAARPPMRSGIGSSWTGDICSAFCGSNHIPETAAQ
RCRDAGAALPPERPRRSSTHDGAGTSSSGGSGSNFGASGLPSESASAHKRKGREDSDSRS
EDAECEATEETKSSSRRYGSKRRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDK
ASILDEAIEYLKSLQMQVQIMWMTTGMAPMMFPGAHQFMPPMAVGMNSACMPAAQGLSHM
SRLPYMNHSMPNHIPLNSSPAMNPMNVANQMQNIQLREASNPFLHPDGWQTVPPQVSGPY
ASGPQVAQQNQIPKASASTVLPNSGAEQPPTSDGI
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacccaagcagcttgcttgcatctccatctcctcctcatcggaactcctcctcc
tcctcctccatctccattatttccaccccggcaacaatccaaccggacgcagcccacggg
ccttgttcccttctcaccacctccaagtacgctttgcgggacactcgcggcagcaagagt
tcgtatactcgcctctgctgctgctgcactgccgcgcctaaagctgagcaagaagaggag
actttgcagcaagagttgctactgtttggtttggttcaggttggggagctactagaagaa
ggaggaatagctaggttgggtagctcagctttgctctccttttattttttattttttttt
ctgtttgttccaaggtttcttgcatcactttgcggcttatcttgttggttttccttctat
tttaaggttgtgaatttcttggggggacacaagaatcgtgggatggatggcaatgcgaga
tcggcggcgaatcagacgaagcaaatcgtcacggacaacgagctggtggagctgctatgg
cacaacggcggcgtcgtggcgcagccgcaggcggcgcaggcgagggtcgtctcctcctcc
ggccgcggccagagcgccagcgtgctcaccggcgacgacacggagaccgccgcgtggttc
ccggacaccctcgacgacgcgctggagaaggacctctacacgcagctctggcgcagcgtc
accggcgacgcgttcccggcggccgcggcggcggggccgagctctcaccacgctccgccg
ccggacttgccgcccccggcggcgaggccgccgatgaggagcggcatcgggtcgagctgg
accggcgacatctgttcggccttctgcggcagcaaccacatcccggagacggcggcgcag
cgctgccgggacgccggcgcggcattgccgccggagcggccgcgccggtcgagcacccac
gacggcgccggcacgtcgtcgtcgggcggctccggcagcaacttcggcgcttccggcttg
cccagcgagagcgccagtgcccacaagaggaaaggcagagaagattcagacagtcgcagt
gaggatgctgaatgcgaggcaaccgaagagaccaaatcgtcgtcgcggcgatatggatca
aagaggagaactcgtgcagctgaagttcataacctgtcagagaggagaagaagggatcgg
atcaacgagaagatgcgcgcattgcaagaactcatacctcattgcaacaagaccgacaag
gcatctatattagatgaagcaatcgagtatctgaagtcactccaaatgcaagttcagatc
atgtggatgactactgggatggcaccaatgatgttccctggtgctcaccagttcatgcca
ccaatggccgtgggcatgaattctgcgtgcatgcctgcggcacaaggcctaagtcacatg
tcaagattgccatacatgaaccattctatgccaaatcacatccctctaaattcatctcca
gctatgaacccaatgaatgttgcaaaccagatgcagaacattcaactgagagaggcaagc
aatcccttccttcacccagatggctggcaaacagtgccaccacaggtatcaggaccatat
gcttctgggcctcaagtagcacagcaaaaccagataccgaaagcgtcagctagcactgtt
ctgccaaattctggggctgaacaaccaccaacctctgatggaatttag
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