KEGG   Oryza sativa japonica (Japanese rice): 4334408
Entry
4334408           CDS       T01015                                 
Name
(RefSeq) 5'-3' exoribonuclease 4
  KO
K20553  5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04016  MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04016 MAPK signaling pathway - plant
    4334408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4334408
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     4334408
SSDB
Motif
Pfam: XRN_M XRN_N Frigida zf-CCHC HEF_HK DUF6175
Other DBs
NCBI-GeneID: 4334408
NCBI-ProteinID: XP_066164618
LinkDB
Position
3:join(34021569..34021775,34021864..34021966,34022079..34022155,34022244..34022435,34022542..34022661,34022748..34022810,34022935..34023069,34023225..34023389,34023502..34023579,34025701..34025787,34025946..34026017,34027690..34027788,34028541..34028611,34029108..34029236,34029334..34029410,34029584..34029624,34029717..34029791,34029923..34030071,34030164..34030268,34030346..34030421,34030863..34030939,34031159..34031923,34032321..34032330,34033222..34034386,34035534..34035709,34035967..34036539)
AA seq 1628 aa
MGVPAFYRWLADRYPQTVSDAVEEEPVELEPGAFVPVDLRRPNPNGLEFDNLYLDMNGII
HPCFHPEGRPAPTTYDEVFKSIFAYIDHLFGLVRPRKLIYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAAAEEERLRKEFEAEGRTLVAKEKSEAIDSNVITPGTPFMFVLSSALQYYIQ
LRLNHTPGWQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECRGSGQADKTVELPPIHKKKYQF
LNIWVLREYLEKDLEIVDPPFKINFERVVDDFVFMCFFVGNDFLPHMPTLEIREGAINLL
MNIYRREFTSMGGYLTDGGEVLLDRVEHFIQSVAVHEEQIFQKRARIQKAIQNNEERNRV
QTENSEDNQYVDKVKLGEPGYRVRYYAEKFKEEAELKPIDQVQRDVVQKYVEGLCWVMRY
YYQGVCSWQWFYPYHYAPFASDLKCLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKY
YGDLMNDPNSPLKSFYPKDFEIDMNGKRFAWQGIAKLPFIDERRLLAETQKLEETLTDEE
RFRNRTMFDILYVRETHPLAAQIAFLYQMCSQSPNASYIIPIDPAASGGMNGFLCLSERN
CYSIVVTSPVKGFNGIAQNRVLNATYLNPQYHKHIPEPPEGVIIPAKILKPSDFKPFPIL
WHEDNSRRQPRERPQVSGALSGSVLGEAAHRLVKNSLQIKSGYSAGLLDMPYRGAPYGPG
NRPRPAGPLGYERGFVENSYNGHMSRSVPNSHPQFFGDAQANRQNVRILERPNYRNNDSA
IHSGMSQLTIQDGPRMHQNNRMQNSGFSPNQPHPNQYAGFPPQRPMQNSGFTPQRPAQYS
GFPHQRPVQIGLQHQPAVNGIQPPLPPSAWIGRPISGVPAGVPAKQDPRMAMDRQPKQDN
SRSQHDKRQQATKVVYRVKGQGPNGLSDADYRAVKASLSRDHHLTLAPAPRVDSSLAPTS
FPSSSSALFPPLPSPLSLSPSLLSLSSPLPSQTPPPRALGFRGSRGAAARVWVGGACAMA
APAAESAVVGVGVDSATSAAVRDGFAELERQQQLLATCTRLYQQLTEHFGSLERRLAARS
ETLRTKRRFLDVRTSRRLEALRRREASIDGSVSLALSRLDSLAKGDAGTTGSASADAAGI
AEGLRSLCASMDSAGFFTFVVARRKEVDALRAELPDALKRCVDPARFAMDAVSEVFPIDK
RAVRSPTDLAWACVLILEAVVPSLADPDPEIGAARPMVPQAARERARGMAREWKDAAEKK
GGVEGAKPPDAHAFLQHVATFAVAEKEDKELYRRIVVSFSWRRQMPRLAITLGLEDEMDD
IIEELITKGQQLDAVNFAYEAGLQEKFPPAPLLKAYLEDSKKIPSNSDNLSTSTGQSGSN
ANKKEQSALRAVIKCVEDHKLEAEFPLEDLRERLEELEKAKTEKKKAASSSSSGGSSGPA
NKRIRASTGGPMPPAKAGRLTDYTGTPSSPATTTTNATFIRSPSHASYGTASPYSYDRPA
AHPLYCGQNTLAMREPYAYHHPSEVSSVGLGMSYPSPPITYPAYAGYSNGIGYSNAMAPA
FHHQAYYR
NT seq 4887 nt   +upstreamnt  +downstreamnt
atgggagtcccggcgttctaccggtggctggcggaccggtacccgcagacggtgtcggac
gcggtggaggaggagcccgtggagctcgagcccggcgccttcgtccccgtcgacctccgc
cgccccaaccccaacggcctcgagttcgacaacctctacctcgacatgaacggcatcatc
cacccctgcttccaccccgagggccgcccggctccgaccacctacgacgaggtgttcaag
tcgatttttgcctacattgaccacctcttcggcctcgtccgcccgaggaagctcatctac
atggccatcgatggcgtcgcgccaagggcgaagatgaatcagcagaggtctagacgtttc
cgggctgctaaggatgcggctgacgcggcagctgaggaggaaaggttgaggaaggaattt
gaggctgaaggcaggactttggttgcgaaggagaagtcggaagcgattgactcaaatgtc
ataactcctgggacaccattcatgtttgtactctcttcggcgcttcaatactacatacag
ctgagattgaaccacacacctgggtggcaatctgtcaaggtaatgctttctgattcgaac
gtccctggggagggagaacacaagattatgtcatacatccgcctgcagcgcaatctccca
ggatttgacccaaatacacgccattgtttatatggccttgatgctgatttgatcatgctt
tctctggctactcatgaggtccacttctccattttaagagaggtgattaccatgccaggg
caacatgaaaaatgctttctctgtggtcaagttggtcacttggctgctgaatgcagagga
tctggtcaggctgataagaccgtggagctccctcctatccataagaagaagtatcagttt
cttaacatctgggttctgcgtgaatacctggagaaggatttggaaattgttgatcccccc
ttcaagataaactttgagcgtgttgtggatgattttgttttcatgtgtttctttgttggg
aatgactttctgcctcacatgccaactttggagatccgcgagggtgccattaatcttctc
atgaatatatatagaagggagttcacatcaatgggtggttacctcaccgatgggggtgag
gttttgttggatcgagtggagcatttcattcaatctgttgctgtccatgaagagcaaatt
ttccagaagcgtgcacgcattcagaaggctatccagaacaatgaggagaggaatagagtg
cagacagagaactctgaggataatcaatatgtggacaaggtaaaattaggagaaccagga
tacagggtgagatactacgctgagaagtttaaagaagaggcagaactaaaacccattgat
caagttcagagagatgttgtccagaaatatgtggaaggtctttgctgggttatgagatac
tactatcaaggtgtttgctcatggcagtggttttatccataccattatgcaccttttgca
tcagacctgaaatgcttggctgaattggagattacatttttcttgggtcaacctttcaag
ccatttgatcaactaatgggaacactaccagctgctagttccaatgcgttgccaaagtac
tatggggatttgatgaatgatcctaattcaccgttgaagtctttctatcccaaagatttt
gagatagacatgaacggcaaacgttttgcatggcagggtattgcaaaattgccttttatc
gatgaaaggcgtctgcttgcggagacgcagaagcttgaagaaacattgacagatgaagag
agattcaggaataggacaatgtttgacatcctttacgtgcgggaaactcatccattggcc
gctcaaattgcatttctatatcagatgtgctctcaatcaccaaatgcttcctatataatt
cccattgaccctgctgctagtggtggaatgaacggatttctttgtttatctgaaaggaac
tgttacagcatcgtggtaacatctccagttaaggggttcaatggcatcgcccagaacaga
gttctgaatgcaacctaccttaaccctcagtatcacaaacacattcctgagcctccggaa
ggtgtcatcatacctgcaaagatattgaagcctagtgatttcaaaccctttcctattttg
tggcatgaagataatagtcggcgtcagccaagagaaaggcctcaggtttctggagctctg
tcaggctctgtcttaggagaggctgcacatcgcctggtgaaaaactcactgcagataaaa
tccggctactctgctgggctgcttgacatgccatacaggggtgccccctatggtcctgga
aacagacctaggcctgctggaccattgggatatgagagaggttttgttgaaaattcatac
aatggacacatgtccagaagcgttccaaattctcatcctcagttcttcggcgacgctcaa
gccaacagacagaatgtgaggatactggaacgaccaaactatcgaaacaacgacagtgcc
atccattcagggatgtcgcaactaacaatccaagatggcccaaggatgcatcaaaacaac
aggatgcagaactccggattttcacctaatcagccacatcccaatcagtatgcaggattc
ccaccccagcgtcccatgcagaactccggttttacgccacagcgacctgcacaatattca
ggatttccacaccagaggcctgtccaaataggacttcaacatcagccagcagtaaatggg
attcaaccaccgttaccccccagtgcatggattggcaggccaataagtggagtcccagca
ggagtacctgccaagcaggatcctaggatggccatggataggcagcccaaacaagataac
tcgagatcacagcatgacaagagacagcaggctactaaggtagtataccgtgtcaaaggt
caaggtcccaatggcctgagtgatgctgactatcgcgccgtgaaggcctctctttcccgc
gaccaccacctcactctggcgccagcgccacgcgtcgactcctcattggctcccacctcc
ttcccctcctcctcctccgctttattcccacctctcccatcgcctctctcgctttcccct
tctctcctctcgctttcctctcctctcccatcccaaacccccccacctcgagctctaggg
tttcgcggatcgaggggcgccgcggctagggtttgggtggggggtgcctgcgcgatggcc
gctccggcggcggagtcggcggtggtgggggtgggggtggattcggcgacgagcgcggcg
gtgagggatggcttcgcggagctggagcggcagcagcagctgcttgcgacctgcacgcgc
ctgtaccagcagctcacggagcacttcggctcgctggagcgccgtctcgccgcgcgctcc
gagacgctccgcaccaagcgccgcttcctcgacgtgcgcacctcccgcaggctcgaggcg
ctccgccgccgggaggcctccatcgacggctccgtctcgctcgcgctctcccggctcgat
tccctcgccaagggcgacgcggggacgaccggctccgcctccgccgacgccgctggaatc
gccgaggggctcaggtcgctctgcgccagcatggactcggccgggttcttcaccttcgtg
gtcgcgaggcgcaaggaggtggacgcgctccgcgccgagctccccgacgcgctcaagcgc
tgcgtcgatccggcgaggttcgccatggacgcggtctccgaggtgttccccatcgacaag
cgggcggtgaggtcccccaccgacctggcgtgggcgtgcgtgctcatcctggaggcggtg
gtgccgtcgctggccgatccggacccggagatcggggcggcgcgccccatggtgccgcag
gcggcgcgcgagagggcgcgcgggatggcgagggagtggaaggacgcggccgagaagaag
ggcggggtggagggcgccaagccaccggatgcgcacgcgttcctgcagcacgtcgcgaca
ttcgcagtcgcagagaaggaggacaaggagctctacaggaggatcgtcgtgagcttctcg
tggcggaggcagatgccgcgtctcgctatcacactcggcctcgaggatgagatggatgat
atcattgaagagcttatcactaaggggcagcaacttgatgctgtgaactttgcatatgag
gctggtcttcaggaaaaattccccccagcccctcttttaaaagcctaccttgaagattca
aagaagataccctcaaattcagataacctgagtactagcactggccaatctgggagcaat
gccaataagaaggagcagtctgcactgcgggctgttataaagtgtgttgaggaccacaaa
ctcgaagctgagtttccattggaggatctccgtgagcggctggaagaactggagaaggcc
aagaccgagaagaaaaaggcggcatcaagcagttccagcggtggtagctctggtccagcc
aacaagcgcatccgggcaagcaccggaggaccgatgccccctgccaaggcaggccgtctc
accgactacaccggtacaccgtcttcgcctgccaccaccacgaccaatgccacattcatt
cgctccccgtcccatgcctcctacggtacagcatctccttactcttatgataggccagct
gcacaccccctctactgtggccagaacacactggcaatgagggagccctatgcataccac
cacccatctgaggtatccagcgtcggcctcggcatgtcatacccatcccctcccataacc
tacccggcctatgctggatacagcaatggaatcggctacagcaatgcaatggccccagcc
tttcaccaccaggcttactaccggtag

DBGET integrated database retrieval system