Oryza sativa japonica (Japanese rice): 4337752
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Entry
4337752 CDS
T01015
Symbol
APG, OsbHLH106
Name
(RefSeq) transcription factor APG
KO
K12126
phytochrome-interacting factor 3
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04075
Plant hormone signal transduction
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
4337752 (APG)
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4337752 (APG)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4337752 (APG)
Transcription factors [BR:
osa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
4337752 (APG)
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_LHW
bHLH_SAC51
Nucleo_P87
Motif
Other DBs
NCBI-GeneID:
4337752
NCBI-ProteinID:
NP_001407085
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Position
5:join(2261143..2262078,2262161..2262259,2262350..2262415,2262493..2262909)
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AA seq
505 aa
AA seq
DB search
MLRGNDTGSDLAELLWDNGAPAPLRPPPPPPFQPFTCSAAATTSPPAHDYLFIKNLMRGG
GAANHHHHDDDDDDDDDVPWLHYHPVVDDDDDADADTAPLPPDYCAALLSGLSDHLPPPA
AAASRVDPDPCSSSHGAVVPSTSAAAAKQARTSGGGGGGVMNFTFFSRPLQQRPSGGETA
SASASAAATSTVPVESTVVQAATNRLRSTPLFSDQRMAWLHPPKPSPRAAAPPPPPPLAP
TTRHRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTSSVCSGNGDRRQLNWRDSHN
NQSAEWSASQDELDLDDELAGVHRRSAARSSKRSRTAEVHNLSERRRRDRINEKMRALQE
LIPNCNKIDKASMLEEAIEYLKTLQLQVQMMSMGTGMFVPPMMLPAAAAAMQHHHMQMQQ
MAGPMAAAAHFPHLGAAAAMGLAGFGMPAAAQFPCPMFPAAPPMSMFAPPPPPPPFPHAA
ATAVEQTPSPPGAADAGNAPAVKQA
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgctacgcgggaacgacaccggcagcgacctggccgagctgctctgggacaacggcgcc
ccggcgccgctcaggccgcctccgcctccgcccttccagcccttcacctgcagcgccgcc
gccaccacgtcgccgccggcgcacgactacctcttcatcaagaatctcatgcggggcggc
ggcgccgccaaccaccaccaccacgatgacgatgacgacgacgacgacgacgtgccgtgg
ttgcattaccaccctgtcgtggacgacgacgacgacgccgacgctgacacggcgccgctg
cctcccgactactgcgccgccttgctctccggcctctccgaccacctcccgccgcccgcc
gctgcggcgagcagggtggaccccgacccctgctcctcctcccacggcgccgtcgtcccg
tccacgtccgccgccgccgccaagcaggctcgcacgagcggcggcggcggcggcggcgtc
atgaacttcaccttcttctcgaggcctctgcagcagcgcccctccggcggcgagaccgcg
tcggcgtcggcgtcggcggcggccacctcgaccgtccccgtcgagtcgacggtggtgcag
gcggcgacgaaccggctgagaagcaccccgctcttctccgaccagaggatggcatggctg
cacccgcccaagccgtcgccacgcgccgccgcaccgccgccgccgccgcctctggcccct
accactcggcaccgactcgacaccgccgccgcgacggcgacggtggcgcagaggttgccg
ccgtccgaggcaagagctcccgacgcgcccccgcctgccgcgaccgcgacggcgacgacc
tcgtccgtctgctccggcaacggcgaccggagacagctcaattggagggacagccacaac
aaccagtccgccgagtggtcggccagtcaagacgagctggacctcgacgacgagctcgca
ggcgtccaccggaggtcggcggcgaggagctccaagcgcagccgcaccgccgaagtccac
aacctgtcagagcggaggagaagagaccggatcaacgagaagatgcgggcgctgcaagag
ctcatcccaaactgcaacaagattgacaaggcgtcgatgctggaggaagccatcgagtac
ctcaagacgctgcagctgcaggtgcagatgatgtcgatggggacggggatgttcgtgccg
ccgatgatgctgccggcggcggcggcggcaatgcagcaccaccacatgcagatgcagcag
atggccgggccaatggcggcggcggcgcatttcccccacctcggcgccgccgccgccatg
gggctcgccggcttcggcatgcccgccgccgcgcagttcccttgcccgatgttccccgcc
gcgccgccgatgtccatgttcgcgccgccgccgccgccgccgccgttccctcacgcggcc
gccaccgccgtcgagcagacgccgtctccgccgggagcagcagacgccggcaacgccccc
gccgtgaagcaggcgtga
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