Oryza sativa japonica (Japanese rice): 9270162
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Entry
9270162 CDS
T01015
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
9270162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
9270162
Transcription factors [BR:
osa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
9270162
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
9270162
NCBI-ProteinID:
XP_025880141
LinkDB
All DBs
Position
3:join(25408663..25408718,25408823..25409648,25409725..25409826,25409915..25409980,25410055..25410120,25410231..25410437,25410550..25410679,25412724..25412728)
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AA seq
485 aa
AA seq
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MNQFVPDWSNMGDASRTLGEDDNLIELLWCNGHVVMQSQNHHRKLPPRPPEKAAAAAVQE
DEAGLWFPFALADSLEKDIFSDLFYEAPVAATAEAAPAGPGAGADGEGKTCKGDAAMAEE
ERGGPGAASEAPRELMPPPKSTNASCSRQQTMSLADGGDNAGDLSELVRARRSSGGAARR
KAEAGGGGGGASSSMLSAIGSSICGSNQVQVQQRTASEPGRRGAPPSAVGSANAIPCGGR
DHGHGHEATTVASSSGRSNCCFGTTTTTEPTSTSNRSSKRKRLDTTEDSESPSEDAESES
AALARKPPAKMTTARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEA
IEYLKSLQLQLQMMWMGSGMAPPVMFPGVHQYLPRMGVGMGAAAAAMPRMPFMAAPQPVV
PTPPVNHLDLGVNHLQPPPTQLYLQGVGYYPLGAKAVQQQQNPPLHVPNGSIMPPPENAP
NTGSG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagttcgtccctgattggagcaacatgggtgacgcatccaggacactcggcgaa
gatgacaacctcattgagctgctctggtgcaacggccatgtcgtcatgcagagccagaat
caccaccggaagctgccgccgaggccgccggagaaggcggcggcggcggcggtgcaagaa
gacgaggccggcctgtggttcccgttcgcgctcgccgactcgctggagaaggacatcttc
tcggacctcttctacgaggcgcccgtcgcggcgacggcggaggcggcgcctgctggcccg
ggcgcgggcgccgacggcgaaggaaagacttgcaagggcgacgcggcaatggcggaggag
gagcgtggcgggccgggcgcggcgtccgaggcgccgcgcgagctgatgccgccgcccaag
tcgacgaacgcgtcctgctcgaggcagcagacgatgagcctggcggacggcggcgacaac
gccggggacctgtcggagctcgtccgggcgaggaggtcgtccggcggcgcggctcggcgg
aaggcggaggccggcggcggcggcggcggcgcgtcgtcgtcgatgctgagcgcgatcggg
tcgagcatctgcgggagcaaccaggtgcaggtgcagcagcgcacggcgagcgagcccggg
cgccgcggcgcgccgccctcggcggtggggagcgcgaacgccatcccctgcggcgggcgc
gaccacggccacggccacgaggcgaccaccgtggcgtcgtcgtcggggcggtccaactgc
tgcttcggcaccaccaccaccacggagccgacgagcaccagcaaccggagcagcaagcgc
aagcggctcgacaccaccgaggactccgagagccccagcgaggacgcggagtcggagtcg
gcggcgctggcgcgcaagccgccggcgaagatgacgacggcgcggaggagccgcgccgcc
gaggtgcacaacctctccgagaggaggagacgggacaggatcaacgagaagatgagagcc
ctgcaggagctcataccacactgcaacaagactgacaaggcgtcgatgctggacgaggcg
atcgagtacctcaagtctctgcagctgcagctgcagatgatgtggatggggagcgggatg
gcgccgccggtgatgttcccgggggtgcaccagtatctgccgaggatgggcgtcgggatg
ggggcggcggcggcggcgatgccgaggatgccgttcatggcggcgccgcagccggtggtg
cccacaccgccggtgaaccaccttgacctgggcgtcaaccacctgcagccgccgccgacc
cagctttatttgcagggagtggggtattatccgttgggggccaaggccgtgcagcagcag
caaaatccaccacttcacgtgccaaatggaagcattatgcctcctcctgaaaatgcaccc
aacacaggatcaggataa
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