KEGG   PATHWAY: acio03430
Entry
acio03430                   Pathway                                
Name
Mismatch repair - Acidovorax sp. 1608163
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
acio03430  Mismatch repair
acio03430

Other DBs
GO: 0006298
Organism
Acidovorax sp. 1608163 [GN:acio]
Gene
EAG14_12965  mutS; DNA mismatch repair protein MutS [KO:K03555]
EAG14_05135  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
EAG14_14755  DNA helicase II [KO:K03657] [EC:5.6.2.4]
EAG14_00845  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
EAG14_11165  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
EAG14_09475  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
EAG14_13270  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
EAG14_15235  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
EAG14_00485  ssb; single-stranded DNA-binding protein [KO:K03111]
EAG14_11200  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
EAG14_22185  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
EAG14_06335  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
EAG14_01575  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
EAG14_09110  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
EAG14_21985  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
EAG14_03195  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
EAG14_10735  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
EAG14_09415  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
EAG14_09905  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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