KEGG   PATHWAY: asn03050
Entry
asn03050                    Pathway                                
Name
Proteasome - Alligator sinensis (Chinese alligator)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
asn03050  Proteasome
asn03050

Other DBs
GO: 0000502
Organism
Alligator sinensis (Chinese alligator) [GN:asn]
Gene
102380325  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
102377773  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 isoform X1 [KO:K06693]
102386642  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 isoform X3 [KO:K03035]
102372233  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
102374467  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
102377985  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
102385136  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
102374135  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 isoform X1 [KO:K03030]
102369921  SEM1; 26S proteasome complex subunit SEM1 [KO:K10881]
102379060  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 isoform X1 [KO:K03029]
102379497  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 isoform X2 [KO:K03028]
102387252  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
102381065  ADRM1; proteasomal ubiquitin receptor ADRM1 [KO:K06691]
102368335  PSMC2; 26S proteasome regulatory subunit 7 [KO:K03061]
102380753  PSMC1; 26S proteasome regulatory subunit 4 [KO:K03062]
102370047  PSMC5; 26S proteasome regulatory subunit 8 [KO:K03066]
102382635  PSMC6; 26S proteasome regulatory subunit 10B [KO:K03064]
102370828  PSMC3; 26S proteasome regulatory subunit 6A [KO:K03065]
102371534  PSMC4; 26S proteasome regulatory subunit 6B [KO:K03063]
102378997  PSME2; proteasome activator complex subunit 2 [KO:K06697]
102370784  PSME3; proteasome activator complex subunit 3 [KO:K06698]
102382871  PSME4; proteasome activator complex subunit 4 isoform X2 [KO:K06699]
102381514  PSMA6; proteasome subunit alpha type-6 isoform X1 [KO:K02730] [EC:3.4.25.1]
102376102  PSMA2; proteasome subunit alpha type-2 isoform X1 [KO:K02726] [EC:3.4.25.1]
102385523  PSMA4; proteasome subunit alpha type-4 isoform X1 [KO:K02728] [EC:3.4.25.1]
102383669  PSMA8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
102380172  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
102380685  PSMA5; proteasome subunit alpha type-5 isoform X1 [KO:K02729] [EC:3.4.25.1]
102368342  PSMA1; proteasome subunit alpha type-1 isoform X2 [KO:K02725] [EC:3.4.25.1]
102372397  PSMA3; proteasome subunit alpha type-3 isoform X4 [KO:K02727] [EC:3.4.25.1]
102368217  PSMB6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
102380141  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
102381860  proteasome subunit beta type-10-like [KO:K02739] [EC:3.4.25.1]
102375945  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
102372734  PSMB2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
102381025  PSMB5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
102387992  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
102368649  PSMB4; LOW QUALITY PROTEIN: proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
102379476  proteasome subunit beta type-9-like [KO:K02741] [EC:3.4.25.1]
106722823  proteasome subunit beta type-8-like isoform X1 [KO:K02740] [EC:3.4.25.1]
102383803  interferon gamma-like [KO:K04687]
102384045  interferon gamma-like [KO:K04687]
102383564  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
102370643  POMP; proteasome maturation protein [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
asn04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

DBGET integrated database retrieval system