KEGG   PATHWAY: ath03050
Entry
ath03050                    Pathway                                
Name
Proteasome - Arabidopsis thaliana (thale cress)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ath03050  Proteasome
ath03050

Other DBs
GO: 0000502
Organism
Arabidopsis thaliana (thale cress) [GN:ath]
Gene
AT1G20200  EMB2719; PAM domain (PCI/PINT associated module) protein [KO:K03033]
AT1G75990  PAM domain (PCI/PINT associated module) protein [KO:K03033]
AT5G57950  26S proteasome regulatory subunit [KO:K06693]
AT5G09900  EMB2107; 26S proteasome regulatory subunit, putative (RPN5) [KO:K03035]
AT5G64760  RPN5B; regulatory particle non-ATPase subunit 5B [KO:K03035]
AT1G29150  ATS9; non-ATPase subunit 9 [KO:K03036]
AT4G24820  26S proteasome regulatory subunit Rpn7 [KO:K03037]
AT5G05780  RPN8A; RP non-ATPase subunit 8A [KO:K03038]
AT3G11270  MEE34; Mov34/MPN/PAD-1 family protein [KO:K03038]
AT5G45620  Proteasome component (PCI) domain protein [KO:K03039]
AT4G19006  Proteasome component (PCI) domain protein [KO:K03039]
AT5G23540  Mov34/MPN/PAD-1 family protein [KO:K03030]
AT1G64520  RPN12a; regulatory particle non-ATPase 12A [KO:K03031]
AT5G42040  RPN12b; regulatory particle non-ATPase 12B [KO:K03031]
AT1G64750  DSS1(I); deletion of SUV3 suppressor 1(I) [KO:K10881]
AT5G45010  DSS1(V); DSS1 homolog on chromosome V [KO:K10881]
AT4G38630  RPN10; regulatory particle non-ATPase 10 [KO:K03029]
AT2G20580  RPN1A; 26S proteasome regulatory subunit S2 1A [KO:K03028]
AT4G28470  RPN1B; 26S proteasome regulatory subunit S2 1B [KO:K03028]
AT2G32730  26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit [KO:K03032]
AT1G04810  26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit [KO:K03032]
AT2G26590  RPN13; regulatory particle non-ATPase 13 [KO:K06691]
AT1G53750  RPT1A; regulatory particle triple-A 1A [KO:K03061]
AT1G53780  26S proteasome regulatory complex ATPase [KO:K03061]
AT4G29040  RPT2a; regulatory particle AAA-ATPase 2A [KO:K03062]
AT2G20140  RPT2b; AAA-type ATPase family protein [KO:K03062]
AT5G19990  RPT6A; regulatory particle triple-A ATPase 6A [KO:K03066]
AT5G20000  AAA-type ATPase family protein [KO:K03066]
AT1G45000  AAA-type ATPase family protein [KO:K03064]
AT5G43010  RPT4A; regulatory particle triple-A ATPase 4A [KO:K03064]
AT3G05530  RPT5A; regulatory particle triple-A ATPase 5A [KO:K03065]
AT1G09100  RPT5B; 26S proteasome AAA-ATPase subunit RPT5B [KO:K03065]
AT5G58290  RPT3; regulatory particle triple-A ATPase 3 [KO:K03063]
AT3G13330  PA200; proteasome activating protein 200 [KO:K06699]
AT5G35590  PAA1; proteasome alpha subunit A1 [KO:K02730] [EC:3.4.25.1]
AT2G05840  PAA2; 20S proteasome subunit PAA2 [KO:K02730] [EC:3.4.25.1]
AT1G16470  PAB1; proteasome subunit PAB1 [KO:K02726] [EC:3.4.25.1]
AT1G79210  N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [KO:K02726] [EC:3.4.25.1]
AT3G22110  PAC1; 20S proteasome alpha subunit C1 [KO:K02728] [EC:3.4.25.1]
AT4G15165  N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [KO:K02728] [EC:3.4.25.1]
AT5G66140  PAD2; proteasome alpha subunit D2 [KO:K02731] [EC:3.4.25.1]
AT3G51260  PAD1; 20S proteasome alpha subunit PAD1 [KO:K02731] [EC:3.4.25.1]
AT1G53850  PAE1; 20S proteasome alpha subunit E1 [KO:K02729] [EC:3.4.25.1]
AT3G14290  PAE2; 20S proteasome alpha subunit E2 [KO:K02729] [EC:3.4.25.1]
AT1G47250  PAF2; 20S proteasome alpha subunit F2 [KO:K02725] [EC:3.4.25.1]
AT5G42790  PAF1; proteasome alpha subunit F1 [KO:K02725] [EC:3.4.25.1]
AT2G27020  PAG1; 20S proteasome alpha subunit G1 [KO:K02727] [EC:3.4.25.1]
AT4G31300  PBA1; N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [KO:K02738] [EC:3.4.25.1]
AT3G27430  PBB1; N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [KO:K02739] [EC:3.4.25.1]
AT5G40580  PBB2; 20S proteasome beta subunit PBB2 [KO:K02739] [EC:3.4.25.1]
AT1G21720  PBC1; proteasome beta subunit C1 [KO:K02735] [EC:3.4.25.1]
AT1G77440  PBC2; 20S proteasome beta subunit C2 [KO:K02735] [EC:3.4.25.1]
AT4G14800  PBD2; 20S proteasome beta subunit D2 [KO:K02734] [EC:3.4.25.1]
AT3G22630  PBD1; 20S proteasome beta subunit D1 [KO:K02734] [EC:3.4.25.1]
AT1G13060  PBE1; 20S proteasome beta subunit E1 [KO:K02737] [EC:3.4.25.1]
AT3G26340  N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [KO:K02737] [EC:3.4.25.1]
AT3G60820  PBF1; N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [KO:K02732] [EC:3.4.25.1]
AT1G56450  PBG1; 20S proteasome beta subunit G1 [KO:K02736] [EC:3.4.25.1]
AT3G53970  proteasome inhibitor-like protein [KO:K06700]
AT5G38650  Proteasome maturation factor UMP1 [KO:K11599]
AT1G67250  Proteasome maturation factor UMP1 [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
ath04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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