KEGG   PATHWAY: ath04120
Entry
ath04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Arabidopsis thaliana (thale cress)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ath04120  Ubiquitin mediated proteolysis
ath04120

Other DBs
GO: 0016567
Organism
Arabidopsis thaliana (thale cress) [GN:ath]
Gene
AT1G02980  CUL2; cullin 2 [KO:K03347]
AT1G04510  MAC3A; MOS4-associated complex 3A [KO:K10599] [EC:2.3.2.27]
AT1G06590  [KO:K03352]
AT1G08910  [KO:K04706] [EC:2.3.2.-]
AT1G10230  SK18; E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein [KO:K03094]
AT1G14400  UBC1; ubiquitin carrier protein 1 [KO:K10573] [EC:2.3.2.23]
AT1G16890  UBC36; ubiquitin-conjugating enzyme 36 [KO:K10580] [EC:2.3.2.23]
AT1G17280  UBC34; ubiquitin-conjugating enzyme 34 [KO:K04554] [EC:2.3.2.23]
AT1G19750  [KO:K10570]
AT1G20140  SK4; SKP1-like 4 [KO:K03094]
AT1G21410  SKP2A; F-box/RNI-like superfamily protein [KO:K03875]
AT1G23410  [KO:K02977]
AT1G26830  CUL3; cullin 3 [KO:K03869]
AT1G27840  ATCSA-1; Transducin/WD40 repeat-like superfamily protein [KO:K10570]
AT1G36340  UBC31; ubiquitin-conjugating enzyme 31 [KO:K06689] [EC:2.3.2.23]
AT1G43140  [KO:K03347]
AT1G45050  ATUBC2-1; Ubiquitin-conjugating enzyme family protein [KO:K10688] [EC:2.3.2.23 2.3.2.25]
AT1G50490  UBC20; ubiquitin-conjugating enzyme 20 [KO:K06688] [EC:2.3.2.23]
AT1G53023  [KO:K10581] [EC:2.3.2.24]
AT1G53025  [KO:K10581] [EC:2.3.2.24]
AT1G53930  [KO:K08770]
AT1G55860  UPL1; LOW protein: E3 ubiquitin ligase-like protein [KO:K10592] [EC:2.3.2.26]
AT1G59790  [KO:K03347]
AT1G59800  [KO:K03347]
AT1G63800  UBC5; ubiquitin-conjugating enzyme 5 [KO:K10576] [EC:2.3.2.23]
AT1G64230  UBC28; ubiquitin-conjugating enzyme 28 [KO:K06689] [EC:2.3.2.23]
AT1G65040  Hrd1B; RING/U-box superfamily protein [KO:K10601] [EC:2.3.2.27]
AT1G65350  UBQ13; ubiquitin 13 [KO:K08770]
AT1G66620  [KO:K04506] [EC:2.3.2.27]
AT1G66630  [KO:K04506] [EC:2.3.2.27]
AT1G66650  [KO:K04506] [EC:2.3.2.27]
AT1G66660  [KO:K04506] [EC:2.3.2.27]
AT1G69670  CUL3B; cullin 3B [KO:K03869]
AT1G70320  UPL2; ubiquitin-protein ligase 2 [KO:K10592] [EC:2.3.2.26]
AT1G73177  BNS; bonsai [KO:K12456]
AT1G75440  UBC16; ubiquitin-conjugating enzyme 16 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
AT1G75950  SKP1; S phase kinase-associated protein 1 [KO:K03094]
AT1G77000  SKP2B; RNI-like superfamily protein [KO:K03875]
AT1G78770  APC6; anaphase promoting complex 6 [KO:K03353]
AT1G78870  UBC35; ubiquitin-conjugating enzyme 35 [KO:K10580] [EC:2.3.2.23]
AT2G02760  UBC2; ubiquiting-conjugating enzyme 2 [KO:K10573] [EC:2.3.2.23]
AT2G03160  SK19; SKP1-like 19 [KO:K03094]
AT2G03170  SK14; SKP1-like 14 [KO:K03094]
AT2G03190  SK16; SKP1-like 16 [KO:K03094]
AT2G04660  APC2; anaphase-promoting complex/cyclosome 2 [KO:K03349]
AT2G16740  UBC29; ubiquitin-conjugating enzyme 29 [KO:K06689] [EC:2.3.2.23]
AT2G16920  UBC23; ubiquitin-conjugating enzyme 23 [KO:K10581] [EC:2.3.2.24]
AT2G18290  APC10; anaphase promoting complex 10 [KO:K03357]
AT2G18600  [KO:K10579] [EC:2.3.2.34]
AT2G20000  HBT; CDC27 family protein [KO:K03350]
AT2G20160  MEO; E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein [KO:K03094]
AT2G21470  SAE2; SUMO-activating enzyme 2 [KO:K10685] [EC:6.2.1.45]
AT2G25700  SK3; SKP1-like 3 [KO:K03094]
AT2G30110  UBA1; ubiquitin-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
AT2G32790  [KO:K10577]
AT2G32950  COP1; Transducin/WD40 repeat-like superfamily protein [KO:K10143] [EC:2.3.2.27]
AT2G33340  MAC3B; MOS4-associated complex 3B [KO:K10599] [EC:2.3.2.27]
AT2G33770  PHO2; phosphate 2 [KO:K10581] [EC:2.3.2.24]
AT2G36170  [KO:K02927]
AT2G39090  APC7; tetratricopeptide repeat (TPR)-containing protein [KO:K03354]
AT2G41980  [KO:K04506] [EC:2.3.2.27]
AT2G46030  UBC6; ubiquitin-conjugating enzyme 6 [KO:K10576] [EC:2.3.2.23]
AT2G47110  UBQ6; ubiquitin 6 [KO:K02977]
AT3G05870  APC11; anaphase-promoting complex/cyclosome 11 [KO:K03358]
AT3G07370  CHIP; carboxyl terminus of HSC70-interacting protein [KO:K09561] [EC:2.3.2.27]
AT3G08690  UBC11; ubiquitin-conjugating enzyme 11 [KO:K06689] [EC:2.3.2.23]
AT3G08700  UBC12; ubiquitin-conjugating enzyme 12 [KO:K06689] [EC:2.3.2.23]
AT3G09790  UBQ8; ubiquitin 8 [KO:K08770]
AT3G13550  FUS9; Ubiquitin-conjugating enzyme family protein [KO:K20217] [EC:2.3.2.23]
AT3G13672  [KO:K04506] [EC:2.3.2.27]
AT3G15355  UBC25; ubiquitin-conjugating enzyme 25 [KO:K10581] [EC:2.3.2.24]
AT3G16090  Hrd1A; RING/U-box superfamily protein [KO:K10601] [EC:2.3.2.27]
AT3G16320  CDC27a; Tetratricopeptide repeat (TPR)-like superfamily protein [KO:K03350]
AT3G17000  UBC32; ubiquitin-conjugating enzyme 32 [KO:K10578] [EC:2.3.2.23]
AT3G17205  UPL6; ubiquitin protein ligase 6 [KO:K10589] [EC:2.3.2.26]
AT3G20060  UBC19; ubiquitin-conjugating enzyme19 [KO:K06688] [EC:2.3.2.23]
AT3G21830  SK8; SKP1-like 8 [KO:K03094]
AT3G21840  SK7; SKP1-like 7 [KO:K03094]
AT3G21850  SK9; SKP1-like 9 [KO:K03094]
AT3G21860  SK10; SKP1-like 10 [KO:K03094]
AT3G25650  SK15; SKP1-like 15 [KO:K03094]
AT3G42830  [KO:K03868] [EC:2.3.2.32]
AT3G46460  UBC13; ubiquitin-conjugating enzyme 13 [KO:K10575] [EC:2.3.2.23]
AT3G46910  [KO:K10609]
AT3G48150  APC8; anaphase-promoting complex subunit 8 [KO:K03355]
AT3G52590  UBQ1; ubiquitin extension protein 1 [KO:K02927]
AT3G53060  SK6; SKP1-like 6 [KO:K03094]
AT3G53090  UPL7; ubiquitin-protein ligase 7 [KO:K10588] [EC:2.3.2.26]
AT3G55380  UBC14; ubiquitin-conjugating enzyme 14 [KO:K10575] [EC:2.3.2.23]
AT3G57870  SCE1; sumo conjugation enzyme 1 [KO:K10577]
AT3G58040  SINAT2; uncharacterized protein [KO:K04506] [EC:2.3.2.27]
AT3G60010  SK13; SKP1-like 13 [KO:K03094]
AT3G60020  SK5; SKP1-like 5 [KO:K03094]
AT3G61790  [KO:K04506] [EC:2.3.2.27]
AT3G62250  UBQ5; ubiquitin 5 [KO:K02977]
AT3G62970  [KO:K10144] [EC:2.3.2.27]
AT4G02570  CUL1; cullin 1 [KO:K03347]
AT4G02890  UBQ14; Ubiquitin family protein [KO:K08770]
AT4G05050  UBQ11; ubiquitin 11 [KO:K08770]
AT4G05320  UBQ10; polyubiquitin 10 [KO:K08770]
AT4G05420  DDB1A; damaged DNA binding protein 1A [KO:K10610]
AT4G10180  DET1; light-mediated development protein 1 / deetiolated1 (DET1) [KO:K10571]
AT4G11920  CCS52A2; cell cycle switch protein 52 A2 [KO:K03364]
AT4G12100  [KO:K10609]
AT4G21100  DDB1B; damaged DNA binding protein 1B [KO:K10610]
AT4G21530  APC4; Transducin/WD40 repeat-like superfamily protein [KO:K03351]
AT4G22910  FZR2; FIZZY-related 2 [KO:K03364]
AT4G24940  SAE1A; SUMO-activating enzyme 1A [KO:K10684] [EC:6.2.1.45]
AT4G27880  [KO:K04506] [EC:2.3.2.27]
AT4G27960  UBC9; ubiquitin conjugating enzyme 9 [KO:K10577]
AT4G33260  CDC20.2; Transducin family protein / WD-40 repeat family protein [KO:K03363]
AT4G33270  CDC20.1; Transducin family protein / WD-40 repeat family protein [KO:K03363]
AT4G34210  SK11; SKP1-like 11 [KO:K03094]
AT4G34470  SK12; SKP1-like 12 [KO:K03094]
AT4G36410  UBC17; ubiquitin-conjugating enzyme 17 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
AT4G36800  RCE1; RUB1 conjugating enzyme 1 [KO:K10579] [EC:2.3.2.34]
AT4G38600  KAK; HECT ubiquitin protein ligase family protein KAK [KO:K10590] [EC:2.3.2.26]
AT5G02880  UPL4; ubiquitin-protein ligase 4 [KO:K10590] [EC:2.3.2.26]
AT5G03240  UBQ3; polyubiquitin 3 [KO:K08770]
AT5G05080  UBC22; ubiquitin-conjugating enzyme 22 [KO:K10583] [EC:2.3.2.23]
AT5G05560  EMB2771; E3 ubiquitin ligase [KO:K03348]
AT5G06460  UBA_2; ubiquitin activating enzyme 2 [KO:K03178] [EC:6.2.1.45]
AT5G13840  FZR3; FIZZY-related 3 [KO:K03364]
AT5G15400  [KO:K10597] [EC:2.3.2.27]
AT5G18650  [KO:K10144] [EC:2.3.2.27]
AT5G19180  ECR1; E1 C-terminal related 1 [KO:K10686] [EC:6.2.1.64]
AT5G20570  RBX1; RING-box 1 [KO:K03868] [EC:2.3.2.32]
AT5G20620  UBQ4; ubiquitin 4 [KO:K08770]
AT5G22920  [KO:K10144] [EC:2.3.2.27]
AT5G23730  RUP2; Transducin/WD40 repeat-like superfamily protein [KO:K10143] [EC:2.3.2.27]
AT5G25560  [KO:K10144] [EC:2.3.2.27]
AT5G26900  CDC20.4; Transducin family protein / WD-40 repeat family protein [KO:K03363]
AT5G27080  CDC20.3; cell division cycle 20.2, cofactor of APC complex-like protein [KO:K03363]
AT5G27570  CDC20.5; cell division cycle 20.2, cofactor of APC complex-like protein [KO:K03363]
AT5G27945  [KO:K03363]
AT5G37640  UBQ9; ubiquitin 9 [KO:K08770]
AT5G37870  [KO:K04506] [EC:2.3.2.27]
AT5G37890  [KO:K04506] [EC:2.3.2.27]
AT5G37900  [KO:K04506] [EC:2.3.2.27]
AT5G37910  [KO:K04506] [EC:2.3.2.27]
AT5G37930  [KO:K04506] [EC:2.3.2.27]
AT5G41340  UBC4; ubiquitin conjugating enzyme 4 [KO:K10576] [EC:2.3.2.23]
AT5G41580  [KO:K04706] [EC:2.3.2.-]
AT5G41700  UBC8; ubiquitin conjugating enzyme 8 [KO:K06689] [EC:2.3.2.23]
AT5G42190  [KO:K03094]
AT5G42990  UBC18; ubiquitin-conjugating enzyme 18 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
AT5G46210  CUL4; cullin4 [KO:K10609]
AT5G50430  UBC33; ubiquitin-conjugating enzyme 33 [KO:K04554] [EC:2.3.2.23]
AT5G50580  SAE1B; SUMO-activating enzyme 1B [KO:K10684] [EC:6.2.1.45]
AT5G50680  SAE1B; SUMO activating enzyme 1B [KO:K10684] [EC:6.2.1.45]
AT5G50870  UBC27; ubiquitin-conjugating enzyme 27 [KO:K04649] [EC:2.3.2.23]
AT5G52250  RUP1; Transducin/WD40 repeat-like superfamily protein [KO:K10143] [EC:2.3.2.27]
AT5G53300  UBC10; ubiquitin-conjugating enzyme 10 [KO:K06689] [EC:2.3.2.23]
AT5G53360  [KO:K04506] [EC:2.3.2.27]
AT5G56150  UBC30; ubiquitin-conjugating enzyme 30 [KO:K06689] [EC:2.3.2.23]
AT5G58760  DDB2; damaged DNA binding 2 [KO:K10140]
AT5G59140  [KO:K03872]
AT5G59300  UBC7; ubiquitin-conjugating enzyme E2 [KO:K10575] [EC:2.3.2.23]
AT5G62540  UBC3; ubiquitin-conjugating enzyme 3 [KO:K10573] [EC:2.3.2.23]
AT5G62800  [KO:K04506] [EC:2.3.2.27]
AT5G65740  [KO:K10606] [EC:2.3.2.27]
AT5G67530  PUB49; plant U-box 49 [KO:K10598] [EC:5.2.1.8]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ath03050  Proteasome
KO pathway
ko04120   

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