KEGG   PATHWAY: azr03030
Entry
azr03030                    Pathway                                
Name
DNA replication - Azoarcus sp. DD4
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
azr03030  DNA replication
azr03030

Organism
Azoarcus sp. DD4 [GN:azr]
Gene
CJ010_00395  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CJ010_13135  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CJ010_24735  ethanolamine utilization protein [KO:K02342] [EC:2.7.7.7]
CJ010_15105  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CJ010_13940  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CJ010_19755  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
CJ010_05730  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
CJ010_09835  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
CJ010_19800  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
CJ010_18185  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
CJ010_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
CJ010_04495  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
CJ010_19845  DNA primase [KO:K02316] [EC:2.7.7.101]
CJ010_23430  single-stranded DNA-binding protein [KO:K03111]
CJ010_10740  single-stranded DNA-binding protein [KO:K03111]
CJ010_20660  single-stranded DNA-binding protein [KO:K03111]
CJ010_13140  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
CJ010_12440  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
CJ010_21810  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
CJ010_13020  DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system