KEGG   PATHWAY: bbuf03050
Entry
bbuf03050                   Pathway                                
Name
Proteasome - Bufo bufo (common toad)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bbuf03050  Proteasome
bbuf03050

Other DBs
GO: 0000502
Organism
Bufo bufo (common toad) [GN:bbuf]
Gene
121004306  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
120988589  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
121004966  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
121004593  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
120978982  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
120980713  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
120980348  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
121008110  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
120977418  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
121000657  SEM1; 26S proteasome complex subunit SEM1 [KO:K10881]
120982029  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 [KO:K03029]
120998054  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
120998024  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
121003281  ADRM1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
120982406  PSMC2; LOW QUALITY PROTEIN: 26S proteasome regulatory subunit 7 [KO:K03061]
120982155  PSMC1; 26S proteasome regulatory subunit 4 [KO:K03062]
121003660  PSMC5; 26S proteasome regulatory subunit 8 [KO:K03066]
120982483  PSMC6; 26S proteasome regulatory subunit 10B [KO:K03064]
120980240  PSMC3; 26S proteasome regulatory subunit 6A [KO:K03065]
120993428  PSMC4; 26S proteasome regulatory subunit 6B isoform X1 [KO:K03063]
120989056  PSME1; proteasome activator complex subunit 1 [KO:K06696]
120989059  PSME2; proteasome activator complex subunit 2 isoform X1 [KO:K06697]
121003510  PSME3; proteasome activator complex subunit 3 [KO:K06698]
120998869  PSME4; proteasome activator complex subunit 4 isoform X1 [KO:K06699]
120982426  PSMA6; proteasome subunit alpha type-6 isoform X1 [KO:K02730] [EC:3.4.25.1]
121001289  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
120986938  proteasome subunit alpha type-2-like [KO:K02726] [EC:3.4.25.1]
120979078  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
121004752  PSMA7; proteasome subunit alpha type-7 isoform X1 [KO:K02731] [EC:3.4.25.1]
120995082  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
120980871  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
120981672  PSMA3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
120986611  PSMB6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
120977149  proteasome subunit beta type-7-like [KO:K02739] [EC:3.4.25.1]
120977331  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
121005081  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
120995281  PSMB2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
120989027  PSMB5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
120998644  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
120982032  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
120977453  PSMB9; proteasome subunit beta type-9 isoform X1 [KO:K02741] [EC:3.4.25.1]
120977451  PSMB8; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
120990854  proteasome subunit beta type-11-like [KO:K11598] [EC:3.4.25.1]
120980459  interferon gamma-like [KO:K04687]
121003768  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
120996319  proteasome maturation protein [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
bbuf04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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