KEGG   PATHWAY: bch03070
Entry
bch03070                    Pathway                                
Name
Bacterial secretion system - Burkholderia cenocepacia HI2424
Description
Gram-negative bacteria secrete a wide range of proteins whose functions include biogenesis of organelles, such as pilli and flagella, nutrient acquisition, virulence, and efflux of drugs and other toxins. Six distinct secretion systems have been shown to mediate protein export through the inner and outer membranes of Gram-negative bacteria. These pathways are highly conserved throughout the Gram-negative bacterial species. In Gram-positive bacteria, secreted proteins are commonly translocated across the single membrane by the Sec pathway or the two-arginine (Tat) pathway.
Class
Environmental Information Processing; Membrane transport
Pathway map
bch03070  Bacterial secretion system
bch03070

Other DBs
GO: 0030253 0015628 0030254 0030255 0046819 0033103 0044098 0043952 0043953
Organism
Burkholderia cenocepacia HI2424 [GN:bch]
Gene
Bcen2424_4184  outer membrane efflux protein [KO:K12340]
Bcen2424_4722  outer membrane efflux protein [KO:K12340]
Bcen2424_4854  type III secretion outer membrane pore, YscC/HrcC family [KO:K03219]
Bcen2424_4850  type III secretion apparatus lipoprotein, YscJ/HrcJ family [KO:K03222]
Bcen2424_4840  Yop virulence translocation R [KO:K03226]
Bcen2424_4855  type III secretion protein, HrpO family [KO:K03227]
Bcen2424_4845  type III secretion protein SpaR/YscT/HrcT [KO:K03228]
Bcen2424_4844  type III secretion exporter [KO:K03229]
Bcen2424_4856  type III secretion FHIPEP protein [KO:K03230]
Bcen2424_4847  type III secretion apparatus H+-transporting two-sector ATPase [KO:K03224] [EC:7.4.2.8]
Bcen2424_4839  type III secretion system apparatus protein YscQ/HrcQ [KO:K03225]
Bcen2424_4848  type III secretion apparatus protein, HrpE/YscL family [KO:K03223]
Bcen2424_0062  general secretion pathway protein D [KO:K02453]
Bcen2424_0059  conserved hypothetical protein [KO:K02452]
Bcen2424_0060  general secretion pathway protein F [KO:K02455]
Bcen2424_0058  general secretion pathway protein G [KO:K02456]
Bcen2424_0057  general secretion pathway protein H [KO:K02457]
Bcen2424_0056  general secretion pathway protein I [KO:K02458]
Bcen2424_0055  general secretion pathway protein [KO:K02459]
Bcen2424_0054  General secretion pathway protein K [KO:K02460]
Bcen2424_0053  general secretion pathway protein L [KO:K02461]
Bcen2424_0052  General secretion pathway M protein [KO:K02462]
Bcen2424_0061  type II secretion system protein E (GspE) [KO:K02454] [EC:7.4.2.8]
Bcen2424_0720  protein-export membrane protein SecD [KO:K03072]
Bcen2424_0719  protein translocase subunit secF [KO:K03074]
Bcen2424_0334  protein translocase subunit secE/sec61 gamma [KO:K03073]
Bcen2424_2250  protein translocase subunit secG [KO:K03075]
Bcen2424_0368  protein translocase subunit secY/sec61 alpha [KO:K03076]
Bcen2424_0721  protein translocase subunit yajC [KO:K03210]
Bcen2424_3163  protein translocase subunit yidC [KO:K03217]
Bcen2424_0569  protein translocase subunit secA [KO:K03070] [EC:7.4.2.8]
Bcen2424_2809  signal recognition particle-docking protein FtsY [KO:K03110]
Bcen2424_2854  protein translocase subunit secB [KO:K03071]
Bcen2424_0590  signal recognition particle subunit FFH/SRP54 (srp54) [KO:K03106] [EC:3.6.5.4]
Bcen2424_0436  twin-arginine translocation protein, TatA/E family subunit [KO:K03116]
Bcen2424_0437  twin-arginine translocation protein, TatB subunit [KO:K03117]
Bcen2424_0438  Sec-independent protein translocase TatC [KO:K03118]
Bcen2424_4841  Lytic transglycosylase, catalytic [KO:K03194]
Bcen2424_3312  Lytic transglycosylase, catalytic [KO:K03194]
Bcen2424_3314  type IV secretory pathway, VirB3 family protein [KO:K03198]
Bcen2424_3317  type IV secretion system family protein [KO:K03200]
Bcen2424_3319  Conjugal transfer protein TrbG/VirB9/CagX [KO:K03204]
Bcen2424_3316  TrbL/VirB6 plasmid conjugal transfer protein [KO:K03201]
Bcen2424_0449  TrbL/VirB6 plasmid conjugal transfer protein [KO:K03201]
Bcen2424_3318  VirB8 family protein [KO:K03203]
Bcen2424_3320  conjugation TrbI family protein [KO:K03195]
Bcen2424_3315  type IV secretion/conjugal transfer ATPase, VirB4 family [KO:K03199] [EC:7.4.2.8]
Bcen2424_3321  ATP/GTP-binding site motif A (P-loop) [KO:K03196] [EC:7.4.2.8]
Bcen2424_3323  TRAG family protein [KO:K03205] [EC:7.4.2.8]
Bcen2424_0459  Rhs element Vgr protein [KO:K11904]
Bcen2424_0475  Rhs element Vgr protein [KO:K11904]
Bcen2424_2639  Rhs element Vgr protein [KO:K11904]
Bcen2424_5025  Rhs element Vgr protein [KO:K11904]
Bcen2424_3746  Rhs element Vgr protein [KO:K11904]
Bcen2424_5731  Rhs element Vgr protein [KO:K11904]
Bcen2424_6418  Rhs element Vgr protein [KO:K11904]
Bcen2424_6904  Rhs element Vgr protein [KO:K11904]
Bcen2424_0469  protein of unknown function DUF796 [KO:K11903]
Bcen2424_0465  conserved hypothetical protein [KO:K11906]
Bcen2424_0485  ImcF domain protein [KO:K11891]
Bcen2424_0463  conserved hypothetical protein [KO:K11892]
Bcen2424_5862  OmpA/MotB domain protein [KO:K11892]
Bcen2424_0473  ATPase AAA-2 domain protein [KO:K11907]
Compound
C00002  ATP
Reference
PMID:11173102
  Authors
Kim JF.
  Title
Revisiting the chlamydial type III protein secretion system: clues to the origin of type III protein secretion.
  Journal
Trends Genet 17:65-9 (2001)
DOI:10.1016/S0168-9525(00)02175-2
Reference
PMID:11309112
  Authors
Plano GV, Day JB, Ferracci F.
  Title
Type III export: new uses for an old pathway.
  Journal
Mol Microbiol 40:284-93 (2001)
DOI:10.1046/j.1365-2958.2001.02354.x
Reference
PMID:11413015
  Authors
Gauthier A, Finlay BB.
  Title
Bacterial pathogenesis: the answer to virulence is in the pore.
  Journal
Curr Biol 11:R264-7 (2001)
DOI:10.1016/S0960-9822(01)00134-8
Reference
PMID:10047550
  Authors
Burns DL.
  Title
Biochemistry of type IV secretion.
  Journal
Curr Opin Microbiol 2:25-9 (1999)
DOI:10.1016/S1369-5274(99)80004-6
Reference
PMID:10920394
  Authors
Christie PJ, Vogel JP.
  Title
Bacterial type IV secretion: conjugation systems adapted to deliver effector molecules to host cells.
  Journal
Trends Microbiol 8:354-60 (2000)
DOI:10.1016/S0966-842X(00)01792-3
Reference
PMID:11309113
  Authors
Christie PJ.
  Title
Type IV secretion: intercellular transfer of macromolecules by systems ancestrally related to conjugation machines.
  Journal
Mol Microbiol 40:294-305 (2001)
DOI:10.1046/j.1365-2958.2001.02302.x
Reference
PMID:10481178
  Authors
Nunn D.
  Title
Bacterial type II protein export and pilus biogenesis: more than just homologies?
  Journal
Trends Cell Biol 9:402-8 (1999)
DOI:10.1016/S0962-8924(99)01634-7
Reference
PMID:11309111
  Authors
Sandkvist M.
  Title
Biology of type II secretion.
  Journal
Mol Microbiol 40:271-83 (2001)
DOI:10.1046/j.1365-2958.2001.02403.x
Reference
PMID:11349009
  Authors
Sandkvist M.
  Title
Type II secretion and pathogenesis.
  Journal
Infect Immun 69:3523-35 (2001)
DOI:10.1128/IAI.69.6.3523-3535.2001
Reference
PMID:15546664
  Authors
Delepelaire P
  Title
Type I secretion in gram-negative bacteria.
  Journal
Biochim Biophys Acta 1694:149-61 (2004)
DOI:10.1016/j.bbamcr.2004.05.001
Reference
PMID:18406342
  Authors
Hazes B, Frost L
  Title
Towards a systems biology approach to study type II/IV secretion systems.
  Journal
Biochim Biophys Acta 1778:1839-50 (2008)
DOI:10.1016/j.bbamem.2008.03.011
Reference
PMID:16448494
  Authors
Johnson TL, Abendroth J, Hol WG, Sandkvist M
  Title
Type II secretion: from structure to function.
  Journal
FEMS Microbiol Lett 255:175-86 (2006)
DOI:10.1111/j.1574-6968.2006.00102.x
Reference
PMID:15546665
  Authors
Filloux A
  Title
The underlying mechanisms of type II protein secretion.
  Journal
Biochim Biophys Acta 1694:163-79 (2004)
DOI:10.1016/j.bbamcr.2004.05.003
Reference
PMID:19396170
  Authors
Spreter T, Yip CK, Sanowar S, Andre I, Kimbrough TG, Vuckovic M, Pfuetzner RA, Deng W, Yu AC, Finlay BB, Baker D, Miller SI, Strynadka NC
  Title
A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system.
  Journal
Nat Struct Mol Biol 16:468-76 (2009)
DOI:10.1038/nsmb.1603
Reference
PMID:15590783
  Authors
Ghosh P
  Title
Process of protein transport by the type III secretion system.
  Journal
Microbiol Mol Biol Rev 68:771-95 (2004)
DOI:10.1128/MMBR.68.4.771-795.2004
Reference
PMID:12360191
  Authors
Cornelis GR
  Title
The Yersinia Ysc-Yop 'type III' weaponry.
  Journal
Nat Rev Mol Cell Biol 3:742-52 (2002)
DOI:10.1038/nrm932
Reference
PMID:17215876
  Authors
Baron C
  Title
VirB8: a conserved type IV secretion system assembly factor and drug target.
  Journal
Biochem Cell Biol 84:890-9 (2006)
DOI:10.1139/o06-148
Reference
PMID:17943123
  Authors
Kwok T, Zabler D, Urman S, Rohde M, Hartig R, Wessler S, Misselwitz R, Berger J, Sewald N, Konig W, Backert S
  Title
Helicobacter exploits integrin for type IV secretion and kinase activation.
  Journal
Nature 449:862-6 (2007)
DOI:10.1038/nature06187
Reference
PMID:16092524
  Authors
Christie PJ, Cascales E
  Title
Structural and dynamic properties of bacterial type IV secretion systems (review).
  Journal
Mol Membr Biol 22:51-61 (2005)
DOI:10.1080/09687860500063316
Reference
PMID:15546668
  Authors
Christie PJ
  Title
Type IV secretion: the Agrobacterium VirB/D4 and related conjugation systems.
  Journal
Biochim Biophys Acta 1694:219-34 (2004)
DOI:10.1016/j.bbamcr.2004.02.013
Reference
PMID:15590781
  Authors
Henderson IR, Navarro-Garcia F, Desvaux M, Fernandez RC, Ala'Aldeen D
  Title
Type V protein secretion pathway: the autotransporter story.
  Journal
Microbiol Mol Biol Rev 68:692-744 (2004)
DOI:10.1128/MMBR.68.4.692-744.2004
Reference
PMID:9778731
  Authors
Henderson IR, Navarro-Garcia F, Nataro JP
  Title
The great escape: structure and function of the autotransporter proteins.
  Journal
Trends Microbiol 6:370-8 (1998)
DOI:10.1016/S0966-842X(98)01318-3
Reference
PMID:18524912
  Authors
Filloux A, Hachani A, Bleves S
  Title
The bacterial type VI secretion machine: yet another player for protein transport across membranes.
  Journal
Microbiology 154:1570-83 (2008)
DOI:10.1099/mic.0.2008/016840-0
Reference
PMID:19251641
  Authors
Leiman PG, Basler M, Ramagopal UA, Bonanno JB, Sauder JM, Pukatzki S, Burley SK, Almo SC, Mekalanos JJ
  Title
Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin.
  Journal
Proc Natl Acad Sci U S A 106:4154-9 (2009)
DOI:10.1073/pnas.0813360106
Reference
PMID:17603507
  Authors
Kulasekara HD, Miller SI
  Title
Threonine phosphorylation times bacterial secretion.
  Journal
Nat Cell Biol 9:734-6 (2007)
DOI:10.1038/ncb0707-734
Reference
PMID:18078384
  Authors
Driessen AJ, Nouwen N
  Title
Protein translocation across the bacterial cytoplasmic membrane.
  Journal
Annu Rev Biochem 77:643-67 (2008)
DOI:10.1146/annurev.biochem.77.061606.160747
Reference
PMID:14641032
  Authors
Pool MR
  Title
Getting to the membrane: how is co-translational protein targeting to the endoplasmic reticulum regulated?
  Journal
Biochem Soc Trans 31:1232-7 (2003)
DOI:10.1042/bst0311232
Reference
PMID:19299134
  Authors
Desvaux M, Hebraud M, Talon R, Henderson IR
  Title
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.
  Journal
Trends Microbiol 17:139-45 (2009)
DOI:10.1016/j.tim.2009.01.004
Reference
PMID:15063851
  Authors
Nakatogawa H, Murakami A, Ito K
  Title
Control of SecA and SecM translation by protein secretion.
  Journal
Curr Opin Microbiol 7:145-50 (2004)
DOI:10.1016/j.mib.2004.01.001
KO pathway
ko03070   
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