KEGG   PATHWAY: bgl00920
Entry
bgl00920                    Pathway                                
Name
Sulfur metabolism - Burkholderia glumae BGR1
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
bgl00920  Sulfur metabolism
bgl00920

Module
bgl_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:bgl00920]
Other DBs
GO: 0006790
Organism
Burkholderia glumae BGR1 [GN:bgl]
Gene
bglu_1g32550  ABC-type sulfate transport system, periplasmic component [KO:K02048]
bglu_1g18730  Thiosulphate-binding protein [KO:K23163]
bglu_1g18720  Sulfate ABC transporter inner membrane subunit CysT [KO:K02046]
bglu_1g18710  Sulfate ABC transporter inner membrane subunit CysW [KO:K02047]
bglu_1g18700  sulfate ABC transporter ATPase subunit [KO:K02045] [EC:7.3.2.3]
bglu_1g32020  ABC taurine transport system, periplasmic component [KO:K15551]
bglu_1g32000  ABC taurine transporter, inner membrane subunit [KO:K15552]
bglu_1g32010  ABC taurine transporter, ATPase subunit [KO:K10831] [EC:7.6.2.7]
bglu_2g14130  putative phosphorous compounds metabolism-like protein [KO:K15553]
bglu_2g14230  putative aliphatic sulfonates-binding protein [KO:K15553]
bglu_1g30150  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
bglu_2g11400  ABC transporter substrate binding protein [KO:K15553]
bglu_1g19420  Binding-protein-dependent transport systems inner membrane component [KO:K15554]
bglu_2g11380  Binding-protein-dependent transport systems inner membrane component [KO:K15554]
bglu_1g19410  Aliphatic sulfonates ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
bglu_2g11390  ABC-type nitrate/sulfonate/bicarbonate transport system ATPase [KO:K15555] [EC:7.6.2.14]
bglu_1g19430  Methanesulfonate sulfonatase, FMNH2-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
bglu_1p1260  FMN reductase [KO:K00299] [EC:1.5.1.38]
bglu_2g04760  NADPH-dependent FMN reductase family protein [KO:K00299] [EC:1.5.1.38]
bglu_1g28350  Sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
bglu_1g28360  Sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
bglu_1p0530  Adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
bglu_1g24880  Adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
bglu_2g09520  inositol monophosphatase [KO:K01082] [EC:3.1.3.7]
bglu_1g28370  phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
bglu_2g10040  Bifunctional reductase [KO:K00380] [EC:1.8.1.2]
bglu_1g28390  Nitrite/sulfite reductase [KO:K00381] [EC:1.8.1.2]
bglu_1g16120  Oxidoreductase, pyridine nucleotide-disulphide family [KO:K17218] [EC:1.8.5.4]
bglu_2g01230  DoxX family protein [KO:K16937] [EC:1.8.5.2]
bglu_2g15980  Rhodanese domain-containing protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
bglu_2g00570  Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
bglu_1g23670  Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
bglu_1g33830  Homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
bglu_2g08500  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
bglu_1p1270  luciferase family protein [KO:K17228] [EC:1.14.14.35]
bglu_1g13700  long-chain-fatty-acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
bglu_2g12030  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
bglu_1g08970  Acyl-CoA dehydrogenase-like protein [KO:K20035] [EC:1.3.99.41]
bglu_1g30720  acyl-CoA dehydrogenase domain-containing protein [KO:K20035] [EC:1.3.99.41]
bglu_3p1140  Hypothetical protein [KO:K21310] [EC:2.1.1.334]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
bgl00260  Glycine, serine and threonine metabolism
bgl00270  Cysteine and methionine metabolism
bgl00680  Methane metabolism
bgl00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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