KEGG   PATHWAY: bgs03030
Entry
bgs03030                    Pathway                                
Name
DNA replication - Borreliella garinii SZ
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
bgs03030  DNA replication
bgs03030

Organism
Borreliella garinii SZ [GN:bgs]
Gene
X921_01380  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
X921_00410  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
X921_01950  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
X921_02000  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
X921_02085  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
X921_03765  DNA helicase [KO:K02314] [EC:5.6.2.3]
X921_00680  DNA primase [KO:K02316] [EC:2.7.7.101]
X921_03750  single-stranded DNA-binding protein [KO:K03111]
X921_04085  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
X921_01540  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
X921_01520  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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