KEGG   PATHWAY: brad03030
Entry
brad03030                   Pathway                                
Name
DNA replication - Bradyrhizobium sp. BF49
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
brad03030  DNA replication
brad03030

Organism
Bradyrhizobium sp. BF49 [GN:brad]
Gene
BF49_3859  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BF49_0203  DNA polymerase III epsilon subunit EC 2777 [KO:K02342] [EC:2.7.7.7]
BF49_3736  DNA polymerase III epsilon subunit EC 2777 [KO:K02342] [EC:2.7.7.7]
BF49_3713  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BF49_4523  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BF49_6697  DNA polymerase III alpha subunit EC 2777 [KO:K02337] [EC:2.7.7.7]
BF49_3494  DNA polymerase III subunits gamma and tau EC 2777 [KO:K02343] [EC:2.7.7.7]
BF49_6989  DNA polymerase III delta prime subunit EC 2777 [KO:K02341] [EC:2.7.7.7]
BF49_0218  DNA polymerase III delta subunit EC 2777 [KO:K02340] [EC:2.7.7.7]
BF49_0961  DNA polymerase III chi subunit EC 2777 [KO:K02339] [EC:2.7.7.7]
BF49_7325  DNA polymerase III beta subunit EC 2777 [KO:K02338] [EC:2.7.7.7]
BF49_0997  Replicative DNA helicase EC 361 [KO:K02314] [EC:5.6.2.3]
BF49_2860  DNA primase EC 277 [KO:K02316] [EC:2.7.7.101]
BF49_6829  Singlestranded DNAbinding protein [KO:K03111]
BF49_3347  Ribonuclease HI EC 31264 [KO:K03469] [EC:3.1.26.4]
BF49_3872  Ribonuclease HII EC 31264 [KO:K03470] [EC:3.1.26.4]
BF49_2270  Ribonuclease HII EC 31264 [KO:K03470] [EC:3.1.26.4]
BF49_3969  DNA polymerase I EC 2777 [KO:K02335] [EC:2.7.7.7]
BF49_5066  DNA ligase EC 6512 [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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