KEGG   PATHWAY: bun03030
Entry
bun03030                    Pathway                                
Name
DNA replication - Bacteroides uniformis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
bun03030  DNA replication
bun03030

Organism
Bacteroides uniformis [GN:bun]
Gene
Bun01g_31320  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
Bun01g_05230  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
Bun01g_14950  DNA-directed DNA polymerase [KO:K02337] [EC:2.7.7.7]
Bun01g_01980  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
Bun01g_13480  DNA polymerase III subunit delta [KO:K02341] [EC:2.7.7.7]
Bun01g_28130  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
Bun01g_31330  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
Bun01g_28450  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Bun01g_30040  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Bun01g_00860  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
Bun01g_21080  ssb; single-stranded DNA-binding protein [KO:K03111]
Bun01g_34440  single-stranded DNA-binding protein [KO:K03111]
Bun01g_35320  single-stranded DNA-binding protein [KO:K03111]
Bun01g_39230  hypothetical protein [KO:K03111]
Bun01g_40490  single-stranded DNA-binding protein [KO:K03111]
Bun01g_40530  single-stranded DNA-binding protein [KO:K03111]
Bun01g_40600  hypothetical protein [KO:K03111]
Bun01g_13140  single-stranded DNA-binding protein [KO:K03111]
Bun01g_13180  single-stranded DNA-binding protein [KO:K03111]
Bun01g_10060  ribonuclease H [KO:K03469] [EC:3.1.26.4]
Bun01g_04600  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
Bun01g_08730  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
Bun01g_28180  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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