KEGG   PATHWAY: ccas03030
Entry
ccas03030                   Pathway                                
Name
DNA replication - Kaistella carnis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
ccas03030  DNA replication
ccas03030

Organism
Kaistella carnis [GN:ccas]
Gene
EIB73_00925  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
EIB73_05330  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
EIB73_11145  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
EIB73_02745  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
EIB73_02470  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
EIB73_02825  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
EIB73_01425  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
EIB73_03980  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
EIB73_09285  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
EIB73_02075  DNA primase [KO:K02316] [EC:2.7.7.101]
EIB73_05780  ssb; single-stranded DNA-binding protein [KO:K03111]
EIB73_09290  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
EIB73_12385  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
EIB73_00685  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
EIB73_02760  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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