KEGG   PATHWAY: cjj03030
Entry
cjj03030                    Pathway                                
Name
DNA replication - Campylobacter jejuni subsp. jejuni 81-176
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
cjj03030  DNA replication
cjj03030

Organism
Campylobacter jejuni subsp. jejuni 81-176 [GN:cjj]
Gene
CJJ81176_0477  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CJJ81176_0741  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
CJJ81176_1174  dnaX; DNA polymerase III, gamma/tau subunits [KO:K02343] [EC:2.7.7.7]
CJJ81176_0612  DNA polymerase III, delta prime subunit, homolog [KO:K02341] [EC:2.7.7.7]
CJJ81176_0658  conserved hypothetical protein [KO:K02340] [EC:2.7.7.7]
CJJ81176_0028  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
CJJ81176_0587  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
CJJ81176_1629  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
CJJ81176_1089  ssb; single-strand binding protein [KO:K03111]
CJJ81176_pTet0031  Single-strand binding protein family [KO:K03111]
CJJ81176_pVir0014  Ssb [KO:K03111]
CJJ81176_1627  rnhA; RNase H [KO:K03469] [EC:3.1.26.4]
CJJ81176_0036  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
CJJ81176_0614  ligA; DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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