KEGG   PATHWAY: cnan03030
Entry
cnan03030                   Pathway                                
Name
DNA replication - Cupriavidus nantongensis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
cnan03030  DNA replication
cnan03030

Organism
Cupriavidus nantongensis [GN:cnan]
Gene
A2G96_15720  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
A2G96_23810  ethanolamine utilization protein [KO:K02342] [EC:2.7.7.7]
A2G96_15540  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
A2G96_05250  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
A2G96_15390  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
A2G96_10925  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
A2G96_19545  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
A2G96_18680  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
A2G96_01260  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
A2G96_05715  hypothetical protein [KO:K02314] [EC:5.6.2.3]
A2G96_07850  hypothetical protein [KO:K02314] [EC:5.6.2.3]
A2G96_14830  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
A2G96_17275  DNA primase [KO:K02316] [EC:2.7.7.101]
A2G96_32000  single-stranded DNA-binding protein [KO:K03111]
A2G96_03140  single-stranded DNA-binding protein [KO:K03111]
A2G96_08140  single-stranded DNA-binding protein [KO:K03111]
A2G96_08475  single-stranded DNA-binding protein [KO:K03111]
A2G96_09210  single-stranded DNA-binding protein [KO:K03111]
A2G96_12775  hypothetical protein [KO:K03111]
A2G96_15715  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
A2G96_13890  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
A2G96_17350  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
A2G96_13985  ligA; DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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