KEGG   PATHWAY: cphy03030
Entry
cphy03030                   Pathway                                
Name
DNA replication - Cnuibacter physcomitrellae
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
cphy03030  DNA replication
cphy03030

Organism
Cnuibacter physcomitrellae [GN:cphy]
Gene
B5808_08945  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
B5808_15435  hypothetical protein [KO:K02342] [EC:2.7.7.7]
B5808_07995  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
B5808_13185  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
B5808_06685  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
B5808_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
B5808_18930  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
B5808_10065  DNA primase [KO:K02316] [EC:2.7.7.101]
B5808_18945  single-stranded DNA-binding protein [KO:K03111]
B5808_06390  hypothetical protein [KO:K03111]
B5808_19940  hypothetical protein [KO:K03111]
B5808_20530  hypothetical protein [KO:K03111]
B5808_03315  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
B5808_06085  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
B5808_09205  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
B5808_06265  DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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