KEGG   PATHWAY: dba03030
Entry
dba03030                    Pathway                                
Name
DNA replication - Desulfomicrobium baculatum
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
dba03030  DNA replication
dba03030

Organism
Desulfomicrobium baculatum [GN:dba]
Gene
Dbac_0141  Exonuclease RNase T and DNA polymerase III [KO:K02342] [EC:2.7.7.7]
Dbac_0553  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Dbac_0096  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Dbac_0194  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
Dbac_3018  DNA polymerase III, delta prime subunit, putative [KO:K02341] [EC:2.7.7.7]
Dbac_0055  DNA polymerase III, delta [KO:K02340] [EC:2.7.7.7]
Dbac_3096  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Dbac_1827  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Dbac_2458  DNA primase [KO:K02316] [EC:2.7.7.101]
Dbac_0325  single-strand binding protein [KO:K03111]
Dbac_0262  Ribonuclease H [KO:K03469] [EC:3.1.26.4]
Dbac_3310  Ribonuclease H [KO:K03470] [EC:3.1.26.4]
Dbac_2078  DNA ligase (NAD(+)) [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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