KEGG   PATHWAY: drh02010
Entry
drh02010                    Pathway                                
Name
ABC transporters - Devosia rhizoryzae
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
drh02010  ABC transporters
drh02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Devosia rhizoryzae [GN:drh]
Gene
JI748_05630  sulfate ABC transporter substrate-binding protein [KO:K02048]
JI748_03595  sulfate ABC transporter substrate-binding protein [KO:K23163]
JI748_03605  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
JI748_05625  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
JI748_03610  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
JI748_05620  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
JI748_03615  sulfate/molybdate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
JI748_12025  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
JI748_12015  ABC transporter permease subunit [KO:K15552]
JI748_12020  ATP-binding cassette domain-containing protein [KO:K10831] [EC:7.6.2.7]
JI748_00310  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
JI748_00315  modB; molybdate ABC transporter permease subunit [KO:K02018]
JI748_11790  extracellular solute-binding protein [KO:K02012]
JI748_11805  extracellular solute-binding protein [KO:K02012]
JI748_16385  extracellular solute-binding protein [KO:K02012]
JI748_11780  iron ABC transporter permease [KO:K02011]
JI748_11795  iron ABC transporter permease [KO:K02011]
JI748_16380  iron ABC transporter permease [KO:K02011]
JI748_11785  ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
JI748_11800  ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
JI748_16375  ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
JI748_00855  thiamine ABC transporter substrate binding subunit [KO:K02064]
JI748_00860  hypothetical protein [KO:K02063]
JI748_00865  ATP-binding cassette domain-containing protein [KO:K02062] [EC:7.6.2.15]
JI748_16610  polyamine ABC transporter substrate-binding protein [KO:K11073]
JI748_16595  ABC transporter permease subunit [KO:K11074]
JI748_16600  ABC transporter permease subunit [KO:K11075]
JI748_16605  potA; polyamine ABC transporter ATP-binding protein [KO:K11076] [EC:7.6.2.16]
JI748_12125  proX; glycine betaine/L-proline ABC transporter substrate-binding protein ProX [KO:K02002]
JI748_16765  hypothetical protein [KO:K02002]
JI748_12120  proline/glycine betaine ABC transporter permease [KO:K02001]
JI748_12115  glycine betaine/L-proline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
JI748_03100  ABC transporter substrate-binding protein [KO:K05845]
JI748_07350  ABC transporter substrate-binding protein [KO:K05845]
JI748_07355  ABC transporter permease [KO:K05846]
JI748_07365  ABC transporter permease [KO:K05846]
JI748_07360  ABC transporter ATP-binding protein [KO:K05847] [EC:7.6.2.9]
JI748_00190  ABC transporter ATP-binding protein [KO:K10111] [EC:7.5.2.-]
JI748_02025  ABC transporter ATP-binding protein [KO:K10111] [EC:7.5.2.-]
JI748_11310  ABC transporter ATP-binding protein [KO:K10111] [EC:7.5.2.-]
JI748_12955  ABC transporter ATP-binding protein [KO:K10111] [EC:7.5.2.-]
JI748_13090  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10111] [EC:7.5.2.-]
JI748_13955  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10111] [EC:7.5.2.-]
JI748_00240  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
JI748_07675  ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
JI748_08585  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
JI748_10905  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
JI748_11035  ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
JI748_11080  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
JI748_12875  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
JI748_16325  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
JI748_00175  extracellular solute-binding protein [KO:K10117]
JI748_11315  extracellular solute-binding protein [KO:K10117]
JI748_00180  sugar ABC transporter permease [KO:K10118]
JI748_11320  sugar ABC transporter permease [KO:K10118]
JI748_00185  carbohydrate ABC transporter permease [KO:K10119]
JI748_11325  carbohydrate ABC transporter permease [KO:K10119]
JI748_07975  sugar ABC transporter substrate-binding protein [KO:K10188]
JI748_07980  sugar ABC transporter permease [KO:K10189]
JI748_07985  carbohydrate ABC transporter permease [KO:K10190]
JI748_07990  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10191]
JI748_12940  sugar ABC transporter substrate-binding protein [KO:K10227]
JI748_12945  sugar ABC transporter permease [KO:K10228]
JI748_12950  carbohydrate ABC transporter permease [KO:K10229]
JI748_00255  hypothetical protein [KO:K10232]
JI748_00250  sugar ABC transporter permease [KO:K10233]
JI748_00245  carbohydrate ABC transporter permease [KO:K10234]
JI748_10920  extracellular solute-binding protein [KO:K17318]
JI748_10930  sugar ABC transporter permease [KO:K17319]
JI748_10925  carbohydrate ABC transporter permease [KO:K17320]
JI748_02010  ABC transporter substrate-binding protein [KO:K10236]
JI748_02015  sugar ABC transporter permease [KO:K10237]
JI748_02020  carbohydrate ABC transporter permease [KO:K10238]
JI748_01950  sugar-binding protein [KO:K10546]
JI748_12765  sugar-binding protein [KO:K10546]
JI748_01960  sugar ABC transporter permease [KO:K10547]
JI748_01955  ATP-binding cassette domain-containing protein [KO:K10548] [EC:7.5.2.-]
JI748_02180  BMP family ABC transporter substrate-binding protein [KO:K07335]
JI748_11140  BMP family protein [KO:K07335]
JI748_12520  BMP family ABC transporter substrate-binding protein [KO:K07335]
JI748_02170  ABC transporter permease [KO:K23535]
JI748_11130  ABC transporter permease [KO:K23535]
JI748_12510  ABC transporter permease [KO:K23535]
JI748_02175  ABC transporter permease [KO:K23536]
JI748_11125  ABC transporter permease [KO:K23536]
JI748_12505  ABC transporter permease [KO:K23536]
JI748_02165  ABC transporter ATP-binding protein [KO:K23537]
JI748_11135  ABC transporter ATP-binding protein [KO:K23537]
JI748_12515  ABC transporter ATP-binding protein [KO:K23537]
JI748_07690  carbohydrate ABC transporter substrate-binding protein [KO:K17315]
JI748_16340  carbohydrate ABC transporter substrate-binding protein [KO:K17315]
JI748_07685  sugar ABC transporter permease [KO:K17316]
JI748_16335  sugar ABC transporter permease [KO:K17316]
JI748_07680  carbohydrate ABC transporter permease [KO:K17317]
JI748_16330  carbohydrate ABC transporter permease [KO:K17317]
JI748_09390  substrate-binding domain-containing protein [KO:K10439]
JI748_10855  substrate-binding domain-containing protein [KO:K10439]
JI748_13230  substrate-binding domain-containing protein [KO:K10439]
JI748_16425  ABC transporter substrate-binding protein [KO:K10439]
JI748_09395  ABC transporter permease [KO:K10440]
JI748_10860  ABC transporter permease [KO:K10440]
JI748_13225  ABC transporter permease [KO:K10440]
JI748_16430  ABC transporter permease [KO:K10440]
JI748_09400  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
JI748_10865  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
JI748_13215  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
JI748_16435  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
JI748_01630  ABC transporter substrate-binding protein [KO:K23508]
JI748_01640  ABC transporter permease [KO:K23509]
JI748_01645  yjfF; sugar ABC transporter permease YjfF [KO:K23509]
JI748_01635  sugar ABC transporter ATP-binding protein [KO:K10820] [EC:7.5.2.9]
JI748_09305  rhaS; rhamnose ABC transporter substrate-binding protein [KO:K10559]
JI748_09295  ABC transporter permease [KO:K10560]
JI748_09290  ABC transporter permease [KO:K10561]
JI748_09300  sugar ABC transporter ATP-binding protein [KO:K10562] [EC:7.5.2.-]
JI748_00155  D-ribose ABC transporter substrate-binding protein [KO:K17202]
JI748_00145  ABC transporter permease [KO:K17203]
JI748_00140  sugar ABC transporter ATP-binding protein [KO:K17204]
JI748_13220  ABC transporter permease [KO:K17206]
JI748_03640  ugpB; sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB [KO:K05813]
JI748_03635  ugpA; sn-glycerol-3-phosphate ABC transporter permease UgpA [KO:K05814]
JI748_03630  ugpE; sn-glycerol-3-phosphate ABC transporter permease UgpE [KO:K05815]
JI748_03625  sn-glycerol-3-phosphate import ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
JI748_02990  substrate-binding domain-containing protein [KO:K02040]
JI748_02985  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
JI748_02980  pstA; phosphate ABC transporter permease PstA [KO:K02038]
JI748_02975  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
JI748_14020  phnD; phosphonate ABC transporter substrate-binding protein [KO:K02044]
JI748_14025  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
JI748_14030  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
JI748_14015  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
JI748_07605  transporter substrate-binding domain-containing protein [KO:K09969]
JI748_07625  amino acid ABC transporter substrate-binding protein [KO:K09969]
JI748_07620  amino acid ABC transporter permease [KO:K09970]
JI748_07615  amino acid ABC transporter permease [KO:K09971]
JI748_07160  amino acid ABC transporter ATP-binding protein [KO:K09972] [EC:7.4.2.1]
JI748_07610  amino acid ABC transporter ATP-binding protein [KO:K09972] [EC:7.4.2.1]
JI748_09825  amino acid ABC transporter substrate-binding protein [KO:K02424]
JI748_09820  amino acid ABC transporter permease [KO:K10009]
JI748_09815  amino acid ABC transporter ATP-binding protein [KO:K10010] [EC:7.4.2.1]
JI748_03035  ABC transporter substrate-binding protein [KO:K01999]
JI748_03080  amino acid ABC transporter substrate-binding protein [KO:K01999]
JI748_06635  substrate-binding protein [KO:K01999]
JI748_16760  ABC transporter substrate-binding protein [KO:K01999]
JI748_06640  branched-chain amino acid ABC transporter permease [KO:K01997]
JI748_16745  branched-chain amino acid ABC transporter permease [KO:K01997]
JI748_16750  branched-chain amino acid ABC transporter permease [KO:K01998]
JI748_06650  ABC transporter ATP-binding protein [KO:K01995]
JI748_16735  ABC transporter ATP-binding protein [KO:K01995]
JI748_06655  ABC transporter ATP-binding protein [KO:K01996]
JI748_16740  ABC transporter ATP-binding protein [KO:K01996]
JI748_03800  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
JI748_03795  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
JI748_03790  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
JI748_03785  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
JI748_03780  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
JI748_00620  peptide ABC transporter substrate-binding protein [KO:K15580]
JI748_00625  ABC transporter permease subunit [KO:K15581]
JI748_00630  ABC transporter permease subunit [KO:K15582]
JI748_00635  ATP-binding cassette domain-containing protein [KO:K15583]
JI748_11860  ABC transporter ATP-binding protein [KO:K15583]
JI748_00640  ATP-binding cassette domain-containing protein [KO:K10823]
JI748_11855  ATP-binding cassette domain-containing protein [KO:K10823]
JI748_07120  peptide ABC transporter substrate-binding protein [KO:K12368]
JI748_13485  ABC transporter substrate-binding protein [KO:K12368]
JI748_07115  ABC transporter permease [KO:K12369]
JI748_13490  ABC transporter permease subunit [KO:K12369]
JI748_07110  ABC transporter permease [KO:K12370]
JI748_13495  ABC transporter permease subunit [KO:K12370]
JI748_07105  ABC transporter ATP-binding protein [KO:K12371]
JI748_13500  ABC transporter ATP-binding protein [KO:K12371]
JI748_07100  ABC transporter ATP-binding protein [KO:K12372]
JI748_13505  dipeptide ABC transporter ATP-binding protein [KO:K12372]
JI748_01725  ABC transporter substrate-binding protein [KO:K13893]
JI748_01740  microcin C ABC transporter permease YejB [KO:K13894]
JI748_01735  ABC transporter permease [KO:K13895]
JI748_01730  ABC transporter ATP-binding protein [KO:K13896]
JI748_07785  ABC transporter substrate-binding protein [KO:K25287]
JI748_07810  ABC transporter substrate-binding protein [KO:K25286]
JI748_07850  iron-siderophore ABC transporter substrate-binding protein [KO:K25286]
JI748_07780  iron chelate uptake ABC transporter family permease subunit [KO:K23186]
JI748_07845  iron ABC transporter permease [KO:K23186]
JI748_07775  iron chelate uptake ABC transporter family permease subunit [KO:K23187]
JI748_07840  iron ABC transporter permease [KO:K23187]
JI748_07770  ABC transporter ATP-binding protein [KO:K23188] [EC:7.2.2.17 7.2.2.-]
JI748_10510  zinc ABC transporter substrate-binding protein [KO:K09815]
JI748_10520  metal ABC transporter permease [KO:K09816]
JI748_10515  metal ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
JI748_14310  metal ABC transporter substrate-binding protein [KO:K11604]
JI748_14300  metal ABC transporter permease [KO:K11605]
JI748_14295  metal ABC transporter permease [KO:K11606]
JI748_14305  manganese/iron ABC transporter ATP-binding protein [KO:K11607]
JI748_09845  biotin transporter BioY [KO:K03523]
JI748_06825  ABC transporter permease [KO:K09808]
JI748_06820  ABC transporter ATP-binding protein [KO:K09810] [EC:7.6.2.-]
JI748_15605  heme ABC transporter permease [KO:K02195]
JI748_15610  ccmB; heme exporter protein CcmB [KO:K02194]
JI748_15615  ccmA; heme ABC exporter ATP-binding protein CcmA [KO:K02193] [EC:7.6.2.5]
JI748_08350  LptF/LptG family permease [KO:K07091]
JI748_08355  LptF/LptG family permease [KO:K11720]
JI748_14540  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
JI748_16905  ABC transporter permease [KO:K09811]
JI748_16910  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
JI748_10315  ABC transporter ATP-binding protein [KO:K18889]
JI748_10310  ABC transporter ATP-binding protein [KO:K18890]
JI748_08700  ABC transporter ATP-binding protein/permease [KO:K24821]
JI748_08890  ABC transporter ATP-binding protein [KO:K18893]
JI748_08895  ABC transporter ATP-binding protein [KO:K18893]
JI748_05180  type I secretion system permease/ATPase [KO:K12536]
JI748_16280  type I secretion system permease/ATPase [KO:K12536]
JI748_09365  cydC; thiol reductant ABC exporter subunit CydC [KO:K16012]
JI748_09360  cydD; thiol reductant ABC exporter subunit CydD [KO:K16013]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
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