KEGG   PATHWAY: fcy03060
Entry
fcy03060                    Pathway                                
Name
Protein export - Fragilariopsis cylindrus
Description
The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
fcy03060  Protein export
fcy03060

Other DBs
GO: 0043952 0043953
Organism
Fragilariopsis cylindrus [GN:fcy]
Gene
FRACYDRAFT_152391  hypothetical protein [KO:K03217]
FRACYDRAFT_211040  60KD_IMP-domain-containing protein [KO:K03217]
FRACYDRAFT_160817  60 kDa inner membrane insertion protein [KO:K03217]
FRACYDRAFT_239214  hypothetical protein [KO:K03217]
FRACYDRAFT_183536  SecA subunit of pre protein translocase [KO:K03070] [EC:7.4.2.8]
FRACYDRAFT_189595  signal recognition particle protein [KO:K03106] [EC:3.6.5.4]
FRACYDRAFT_184137  SRP54-domain-containing protein [KO:K03106] [EC:3.6.5.4]
FRACYDRAFT_205448  protein translocase complex subunit [KO:K10956]
FRACYDRAFT_269161  SecE-domain-containing protein [KO:K07342]
FRACYDRAFT_208718  hypothetical protein [KO:K12275]
FRACYDRAFT_260378  hypothetical protein [KO:K09540]
FRACYDRAFT_205828  heat shock protein 70 [KO:K09490] [EC:3.6.4.10]
FRACYDRAFT_229928  heat shock protein 70 [KO:K09490] [EC:3.6.4.10]
FRACYDRAFT_235757  hypothetical protein [KO:K03108]
FRACYDRAFT_233139  hypothetical protein [KO:K03107]
FRACYDRAFT_233488  signal recognition particle, SRP19 subunit [KO:K03105]
FRACYDRAFT_273860  SRP54-domain-containing protein [KO:K13431]
FRACYDRAFT_167725  hypothetical protein [KO:K12272]
FRACYDRAFT_268898  anion-transporting ATPase [KO:K01551] [EC:7.3.2.7 7.3.-.-]
FRACYDRAFT_157498  anion-transporting ATPase [KO:K01551] [EC:7.3.2.7 7.3.-.-]
FRACYDRAFT_190659  TPR-like protein [KO:K16365]
FRACYDRAFT_269727  hypothetical protein [KO:K03116]
FRACYDRAFT_205363  LexA/Signal peptidase [KO:K03100] [EC:3.4.21.89]
FRACYDRAFT_162086  LexA/Signal peptidase [KO:K03100] [EC:3.4.21.89]
FRACYDRAFT_162195  LexA/Signal peptidase [KO:K03100] [EC:3.4.21.89]
FRACYDRAFT_227407  microsomal signal peptidase 12 kDa subunit [KO:K12946] [EC:3.4.-.-]
FRACYDRAFT_225111  microsomal signal peptidase 25 kDa subunit [KO:K12947] [EC:3.4.-.-]
FRACYDRAFT_183888  microsomal signal peptidase 25 kDa subunit [KO:K12947] [EC:3.4.-.-]
FRACYDRAFT_195672  signal peptidase 22 kDa subunit [KO:K12948] [EC:3.4.-.-]
FRACYDRAFT_225501  signal peptidase I [KO:K13280] [EC:3.4.21.89]
FRACYDRAFT_206019  LexA/Signal peptidase [KO:K09647] [EC:3.4.21.-]
Reference
  Authors
Dalbey RE, Robinson C.
  Title
Protein translocation into and across the bacterial plasma membrane and the plant thylakoid membrane.
  Journal
Trends Biochem Sci 24:17-22 (1999)
DOI:10.1016/S0968-0004(98)01333-4
Reference
  Authors
Berks BC, Sargent F, Palmer T.
  Title
The Tat protein export pathway.
  Journal
Mol Microbiol 35:260-74 (2000)
DOI:10.1046/j.1365-2958.2000.01719.x
Reference
  Authors
Wexler M, Sargent F, Jack RL, Stanley NR, Bogsch EG, Robinson C, Berks BC, Palmer T.
  Title
TatD is a cytoplasmic protein with DNase activity. No requirement for TatD family proteins in sec-independent protein export.
  Journal
J Biol Chem 275:16717-22 (2000)
DOI:10.1074/jbc.M000800200
Reference
  Authors
Jongbloed JD, Martin U, Antelmann H, Hecker M, Tjalsma H, Venema G, Bron S, van Dijl JM, Muller J.
  Title
TatC is a specificity determinant for protein secretion via the twin-arginine translocation pathway.
  Journal
J Biol Chem 275:41350-7 (2000)
DOI:10.1074/jbc.M004887200
Reference
  Authors
Rapoport TA
  Title
Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes.
  Journal
Nature 450:663-9 (2007)
DOI:10.1038/nature06384
Reference
  Authors
Flower AM
  Title
The SecY translocation complex: convergence of genetics and structure.
  Journal
Trends Microbiol 15:203-10 (2007)
DOI:10.1016/j.tim.2007.03.001
Reference
  Authors
Osborne AR, Rapoport TA, van den Berg B
  Title
Protein translocation by the Sec61/SecY channel.
  Journal
Annu Rev Cell Dev Biol 21:529-50 (2005)
DOI:10.1146/annurev.cellbio.21.012704.133214
Reference
  Authors
Paetzel M, Karla A, Strynadka NC, Dalbey RE
  Title
Signal peptidases.
  Journal
Chem Rev 102:4549-80 (2002)
DOI:10.1021/cr010166y
Reference
  Authors
Paetzel M, Dalbey RE, Strynadka NC
  Title
The structure and mechanism of bacterial type I signal peptidases. A novel antibiotic target.
  Journal
Pharmacol Ther 87:27-49 (2000)
DOI:10.1016/S0163-7258(00)00064-4
Reference
  Authors
Ng SY, Chaban B, VanDyke DJ, Jarrell KF
  Title
Archaeal signal peptidases.
  Journal
Microbiology 153:305-14 (2007)
DOI:10.1099/mic.0.2006/003087-0
Reference
  Authors
Desvaux M, Hebraud M, Talon R, Henderson IR
  Title
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.
  Journal
Trends Microbiol 17:139-45 (2009)
DOI:10.1016/j.tim.2009.01.004
Reference
  Authors
Nakatogawa H, Murakami A, Ito K
  Title
Control of SecA and SecM translation by protein secretion.
  Journal
Curr Opin Microbiol 7:145-50 (2004)
DOI:10.1016/j.mib.2004.01.001
KO pathway
ko03060   
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