KEGG   PATHWAY: fpo03030
Entry
fpo03030                    Pathway                                
Name
DNA replication - Flavobacterium psychrophilum FPG3
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
fpo03030  DNA replication
fpo03030

Organism
Flavobacterium psychrophilum FPG3 [GN:fpo]
Gene
FPG3_08475  exonuclease [KO:K02342] [EC:2.7.7.7]
FPG3_03510  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
FPG3_10460  exonuclease [KO:K02342] [EC:2.7.7.7]
FPG3_04585  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
FPG3_01845  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
FPG3_10575  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
FPG3_00105  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
FPG3_11025  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
FPG3_04080  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
FPG3_05485  DNA helicase [KO:K02314] [EC:5.6.2.3]
FPG3_07600  DNA primase [KO:K02316] [EC:2.7.7.101]
FPG3_09730  single-stranded DNA-binding protein [KO:K03111]
FPG3_00455  single-stranded DNA-binding protein [KO:K03111]
FPG3_01090  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
FPG3_03485  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
FPG3_08795  DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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